Amaranthus tricolor (tampala): 130815899
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Entry
130815899 CDS
T09367
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03022
Basal transcription factors
atri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130815899
09124 Replication and repair
03420 Nucleotide excision repair
130815899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130815899
03400 DNA repair and recombination proteins [BR:
atri03400
]
130815899
Transcription machinery [BR:
atri03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
130815899
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
130815899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
130815899
NCBI-ProteinID:
XP_057538404
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All DBs
Position
6:complement(31263128..31271111)
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AA seq
451 aa
AA seq
DB search
MPQVRIIAKNFIDMVASLPAVKLDMLYANPFICEAILRSLPPLAKKYILQMLYIDAPVPA
KSLEEWVLPDGLSKHRVAIDRLIQLRVLTESLDRKKETNYEMNGKFQVNLQKQLIYGGEL
PREPMPKNAVRLPSLEELDTYALEQWERFLLHLISSSQAEKLTNFCPSMMKVFQRGLLSQ
REKEGSRLTEYGFQFLLMETNAQLWYIIREYIASAEERGVDPANLISFLLELSFHEMGQA
YNINTLTDVQKSTIKDLADLGLVKLQQGRKESWFLPTKLATTLSVSLSDTATRKQGFVVV
ETNFRMYAYSTSKLHCEILRLFARIEYQLPNLIVCAINKESLYNAFENGITSEQIISFLQ
QNAHPRVAEKIPTVPENVTDQIRLWESDLNRVEMSPAQFYDEFPSRDLFEAACDFAREYG
ALLWENPKKMQLVVKAELHNDLREYLRRQKQ
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaagtgagaatcatagcgaagaatttcattgatatggtggcgtcattgcctgct
gtcaagctcgatatgctatatgctaatcccttcatttgtgaagctattctcaggtccttg
cctcctttggcaaagaagtacattttgcaaatgttgtacattgatgctccagtacctgcc
aagtccttggaagagtgggttcttcctgatggactctcaaaacatagagttgctatcgac
cgattgattcaactgagagttcttactgaaagtcttgacaggaaaaaggaaaccaactat
gaaatgaatggaaagtttcaagttaaccttcagaagcagctaatatatggtggagaatta
ccaagagaaccaatgcctaaaaatgccgtgagacttccaagcttggaggaactagatacc
tatgctcttgaacagtgggagcgtttcttgctgcatcttattagctccagtcaagcggaa
aagttgacaaacttctgtccttctatgatgaaggttttccaacgtggtctcttgagtcaa
agagaaaaagaaggttcaaggttaactgagtatggtttccagttcctgctgatggagaca
aatgcgcaactttggtatattatcagagaatatattgccagtgctgaggagcgtggagta
gacccagcaaatttgatttcatttttgctagaacttagttttcatgagatgggacaggca
tacaacattaacactttgactgatgttcagaaaagtacgattaaggaccttgctgatttg
ggattagtcaaacttcagcagggaaggaaggagagttggttccttccgacaaagttggct
accactctttcggttagtttatctgatacagcgactaggaaacagggttttgtggttgtg
gagacaaactttaggatgtatgcttattctacgtccaaattacattgcgagattcttcgt
ctttttgcaaggatagaataccaacttcctaatctcattgtttgtgcaattaataaagaa
agcctgtataacgcctttgaaaacggtatcacttcagaacagataatctcgtttcttcag
caaaatgcacatcctcgtgtagctgagaaaataccgactgtcccagaaaatgttacagac
cagattaggctttgggaatcagacttaaatagagttgaaatgtcacctgcacagttttat
gatgaatttccgtctagggatctgttcgaggcagcttgtgacttcgcccgagaatacggt
gctttgctatgggaaaacccaaaaaagatgcagcttgttgtaaaagcagaactacataat
gatctgcgggagtacctccgacgccaaaaacaataa
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