Amaranthus tricolor (tampala): 130826092
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Entry
130826092 CDS
T09367
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03022
Basal transcription factors
atri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130826092
09124 Replication and repair
03420 Nucleotide excision repair
130826092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130826092
03400 DNA repair and recombination proteins [BR:
atri03400
]
130826092
Transcription machinery [BR:
atri03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
130826092
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
130826092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Tfb4
IBR
Rgg_C
Motif
Other DBs
NCBI-GeneID:
130826092
NCBI-ProteinID:
XP_057547607
LinkDB
All DBs
Position
10:1081661..1093206
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AA seq
430 aa
AA seq
DB search
MMNSIEHREVSHSRGRQFDRDEDEEDEDEDNDMSAWERAYTDERSWESLQEDESGLLRPI
DNKMLSHAQYRRRIRAISSTSTATRIQKGLIRYLYVVMDFSRAATEMDFKPSRMAVIAKH
VEAFVREFFDQNPLSQIGLVVIKDGVANCLTDMGGSPESHIKALMKKLVCSGDASLQNAL
ELVHEYLVQVPSYGHREVLILYSALSTCDPGDIMETIQRCKKSKIRCSIVGLSAEMFICK
HICQETGGSYSIALDELHLKELLLEHAPPPPAIAEYAIANLIRMGFPQRAAEGVASICVC
HKEAKVGAGYTCPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPITPFDEVSFSQG
NMTGKKSIETCFGCIQNLMNPGTASGYCVTCPKCKKYFCLDCDIYIHESLHNCPGCESLR
HSKSINTGEG
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgatgaatagcattgaacatagggaggttagtcattctagaggaagacagtttgatcga
gatgaagacgaggaggatgaagatgaggataacgatatgtctgcatgggagagggcctat
actgacgagagatcatgggaatctttgcaagaagatgagtccggtcttttacggccaatt
gataataagatgctctcccatgctcagtaccgtcggcgtatacgtgccatctcgtctact
tcaacagctactcgaattcagaaaggccttattcgctatctatatgtcgtcatggatttt
tcacgggcagcgactgagatggatttcaaaccaagcagaatggctgtaattgctaaacat
gtagaggctttcgtaagggaattttttgatcagaatccacttagtcaaataggtcttgtg
gtaattaaagatggtgttgctaattgcttaacagatatgggtggaagccctgaatctcat
attaaggccttgatgaagaagttagtgtgttcaggagatgcttctttgcagaatgcttta
gaacttgttcatgaatatctggtacaagttccatcatatggccatcgtgaagttcttatc
ttgtattcggctcttagcacttgtgatccaggagacataatggagactattcaaagatgc
aagaaatctaaaattaggtgttccattgtgggtctttctgccgagatgtttatttgcaaa
catatctgccaggaaacaggaggatcatattctattgctctggatgagctccatctgaaa
gaactgttgctggaacatgcaccacctcctccagccatagctgagtatgcaattgctaat
ttgattaggatgggttttcctcaaagagcagctgaaggtgtagcttcaatatgtgtctgc
cataaagaggctaaggttggtgctggttacacctgtccaagatgcaaggcacgtgtgtgt
gagttgcctacagaatgtcgcatatgtgggctgactcttgtttcttccccccatttagca
aggtcatatcatcacctcttcccaataacaccatttgatgaagtatcattttcacaagga
aatatgactgggaaaaaatcaatagagacatgtttcggatgcattcagaatctgatgaat
cctggtactgcatctggctactgtgttacttgcccaaaatgcaaaaagtatttctgtctt
gattgtgacatttatattcatgaaagtttacataattgtcctggctgtgagagcttgaga
cactctaaatcaatcaatactggtgagggctga
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