Aegilops tauschii (wheat D): 109756376
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Entry
109756376 CDS
T04345
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ats
Aegilops tauschii (wheat D)
Pathway
ats03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ats00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109756376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ats03021
]
109756376
03019 Messenger RNA biogenesis [BR:
ats03019
]
109756376
Transcription machinery [BR:
ats03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109756376
Messenger RNA biogenesis [BR:
ats03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109756376
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
zf-C2H2_2
Motif
Other DBs
NCBI-GeneID:
109756376
NCBI-ProteinID:
XP_020170814
LinkDB
All DBs
Position
Unknown
AA seq
932 aa
AA seq
DB search
MASAAAAAPVVGQVVERFRARLREEAGEEPGAAAVVGVYKEALAELTFNCKPIITELTII
AGQHAALAARGIADAICARILEVPVEQKLPSLYLLDSIVKNIGQEYVEDFATRLQKVFCF
AYREVHPKQHPAMRHLFRTWSQVFPSSVLQGIEDELQFSPSENKRPATTTIPRQSESLSP
RPSHGIHVNPKYLEAQHQLKNGTKVDQLATRGRQMLDVAEDHINGLTTNSLRGFPSTSSK
LQRSMILYTENPDQQETFQSRIGLIRRDMSRSPPPDVLPRNASPKRPLEMPRLSHSALGH
DPRRLPGRNGWFERQRAFEDSAQRPSMSTLDEEYRKQSARELIDAYGNSQGNDADDRLPK
MQRLESNGMASRSSAQKWLTSEEEEYTWEDMRPTLSRNRNNIPSLPSSETLRAGFPGPNT
GQLDSDIGMRSWRSQAPRPALNLEDRTDHVDIATSRRYPGNFGLHNGAISEYHSSVNTLD
PGRILAMSAPPWQQTNGLPLRIQAPQPSSTLNRLALPTDVEMPVKMLATGGPYDAMHVDL
PLTNRSSPAPAPIEWPLHHSQPPHNTKDIRGATDSLEVRPFIRHGVNSSVFVPRHLYDAL
DRKTVSTGNLAQPPYQHPDLLSSSQQNQGTNFGNQSQPHDVPQFHPHSHSHPPEAFRSFA
PSMPIAPPQNPFQGQGGSAAVPPVTPLPNTFSVTPTVQPYGVSSVSSFALPPLHRGLPPA
LLQMGPSSSQVGGPTTYFSGILSNLMNHGVITLEPSSQPQDSVGVDFNVDLKVRNESVIN
ALYQDLHRQCKTCGLRFKCQEEHRAHMDWHVTKNRNSKNRKQSSRKYFVTVGEWLRAAET
VGNDGVPSFELTEPIPDRNEEKEMAVPADENQTTCALCQEPFEDFYSDETEEWMYKGAVY
MNAPDGNIVGLQRSHLGPIVHSKCRSGPSNIS
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgccgctgcggcggccccagtcgtgggccaggtcgtggagcggttccgcgcg
cggctgcgggaggaggcgggagaggagccgggggcggccgcggtggtgggcgtctacaag
gaggccctcgccgagctcaccttcaactgcaagcccatcatcaccgagcttaccatcatc
gcgggccagcacgccgcgctcgccgccaggggcatcgccgacgccatctgcgcccgcatc
cttgaggtgccagtcgagcagaaattgccatctttgtatctgctagatagtatcgtgaag
aacataggacaagaatatgtagaggactttgccactcgattgcagaaggtattttgtttt
gcatacagggaagttcatcccaaacagcatcctgcaatgcgacacctcttccgtacctgg
tcgcaagtgttcccttcttctgtccttcaagggatcgaggatgagcttcagttttctcct
tcagagaataagcgtcctgccacaacgactattccgcgacagtcagagtcgttatctcct
aggccatctcatggcatccatgtaaatccaaagtatctagaagcgcaacaccaactcaag
aacggtaccaaggtggatcagctagcaactcgaggcaggcaaatgcttgacgtggcggag
gatcatattaatgggttaacaacaaatagtttgcggggatttccttccacttcttcaaag
ctccagagatctatgatactgtatactgaaaatcctgatcaacaagaaacatttcaatca
cgtattggattgataagaagagatatgtccagatcaccacctcctgatgtgctccctagg
aatgcatccccaaaaagaccactagagatgccgcggctgtctcattctgcattggggcat
gatcctagaagattgcctggtaggaatggttggtttgaacggcaacgtgcttttgaggat
agtgcacaacggccttcgatgagcacgcttgatgaagaatataggaaacaaagtgcaaga
gaacttattgatgcctacggaaattctcaaggcaatgatgctgatgataggcttcccaag
atgcaacggctagaatcaaatggcatggcaagtagatccagtgcacaaaaatggctcact
tcagaggaagaggagtatacttgggaggatatgcgtccaactttgtcccgaaatagaaac
aacattccgtctttaccttcctctgaaaccttgagagctggatttcctgggccaaacact
gggcagctggattctgatattgggatgcgcagctggcgaagccaggctcctcgaccagca
ctaaatctcgaagacaggactgatcatgttgacatagccactagtaggagatatccaggc
aattttggtctgcacaatggagctatttcagagtaccatagttctgtgaatacccttgat
cctggaagaattcttgctatgtcagctccaccgtggcagcagactaatggcctgcctttg
cgaatacaagcacctcaaccttcatcaacactgaataggttggcactgcccactgatgtt
gaaatgcctgtcaagatgttggccactggtggtccatatgatgctatgcatgtagactta
cccttgactaataggtcctcgcctgctcctgctcccatagaatggcctcttcatcatagt
caaccaccacataatacaaaagatattagaggtgcaacagatagtcttgaagttaggcca
tttatcaggcatggagtcaattcatctgtatttgttcctcggcatctatatgatgcattg
gatcggaaaactgtaagtaccggtaacttagctcaaccaccataccagcacccagatttg
ttgtcatcgagtcaacagaatcaaggtacaaattttggaaatcaatctcagcctcatgat
gtgccacagtttcatcctcattcccattcccatcctccggaggcatttagaagctttgcc
cccagcatgcctatagctcccccccaaaatccattccaaggacaaggaggtagtgcagca
gtaccaccagttacacctctaccaaacaccttttctgtaacacctactgtgcaaccctat
ggtgtgtcgtcagtgtctagttttgctctgccaccattacatcgtggcctacctcctgct
ttgttgcagatgggtccatcttcatcacaagttggtgggcctacaacatatttctctgga
attttaagtaaccttatgaatcacggtgtaattacactggagccttctagtcaacctcag
gactctgttggagttgacttcaatgtagacctcaaggtgcgcaacgagtctgtcattaat
gctctgtatcaggatctccacaggcaatgcaaaacgtgtggccttcgttttaaatgccag
gaagagcaccgtgctcatatggattggcatgttacgaaaaacagaaattccaaaaatcgc
aagcaatcttcacgtaaatattttgtcaccgtgggggaatggttaagagcagcagaaaca
gtaggaaatgatggtgttccttctttcgagctcacggaaccaatccctgacagaaatgaa
gagaaagaaatggctgttcctgccgatgaaaaccaaacaacatgtgctttatgtcaagag
ccatttgaggatttctacagcgatgaaactgaagagtggatgtacaaaggtgcagtttac
atgaatgcacctgatggtaatattgttggtctccaaaggtcgcatttggggcctattgtc
cattccaaatgtcgatctggccccagtaatatttcttag
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