Agrobacterium fabrum: Atu5055
Help
Entry
Atu5055 CDS
T00070
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
atu
Agrobacterium fabrum
Pathway
atu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
atu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Atu5055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atu03400
]
Atu5055
Enzymes [BR:
atu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Atu5055
DNA repair and recombination proteins [BR:
atu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Atu5055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AAK90430
UniProt:
Q7D410
LinkDB
All DBs
Position
At:complement(52456..55110)
Genome browser
AA seq
884 aa
AA seq
DB search
MASDKLSTYKQKRDFQKTQEPSGAAKLKASNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNKTPE
QALAKGDFKFTLEGERLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDFSVEEKGAAVLDEN
DTSVASGRTMEAIAAGKGRKPKPFMVQSGDVQADAVWDSNHGLAAEERASDTKAKRKPAL
KKPAKSTMPEFIPPQLCETLDRPPSAKGWIHEIKFDGYRIQTRIENGEVTLKTRKGLDWT
AKYPAIATSAANLPDAIIDGEICALDENGAPDFAALQAALSEGKTDELVYFAFDLLFEEN
EDLRQLPLTERKERLQTLLDDAGEDPRLRFVEHFETGGDAVLKSACKLSLEGIVSKQADA
PYQSGRTETWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVFKGDHFVYVGRVGTGYGAKT
VDTILPRLRELETSKSPFTGIGAPKKDPNVVWVKPELVAEIQFAGWTADGLVRQAAFKGL
REDKPAHEVEAEKPASPAKTDTPTPAKSKPSRPARGKNAKAEVMGVMISSPDKALWPDAN
DGEPVTKEDLARYHEAVGPWLIDHIKGRPCSIIRTPDGIGGEVFFQRHAMPGTSNLIELV
KVFGDKKPYLQIDRVEGLAAIAQIGGVELHPWNCEPGQPEVPGRLVFDLDPGPDVPFSTV
VEAAREMRDRLEELGLVSFCKTTGGKGLHVVTPLAVPKGKKLSWPEAKGFAHDVCMQMAR
ETPELYLIKMAKNQRNGRIFLDYLRNDRMATAVAPLSPRARAGAPVSMPLSWKQVKTDLD
PKRFTIRTVPALLSKTTAWQDYCDGQRSLEQAIKRLAKSMKQAA
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgacaagctctcgacctacaagcagaaacgcgattttcaaaaaacgcaggag
cctagcggcgcagcgaagctgaaggcgtcgaaccggaggcgctttgttatccagaagcac
gatgcgacccgactgcattacgacctgcgcctcgaactcgacggcgtgttcaaatcctgg
gctgtaaccaaggggccctctctcgatccgcacgacaagcgcctggctgtcgaggtcgaa
gaccatccgttggactatggcgacttcgaaggcacgatccccaaggggcagtatggcggc
ggcacggtcatgctgtgggatcgcgggtactgggagccggaaggcaacaagacgcccgaa
caggcgctcgccaaaggggatttcaagttcacgctggagggagagcggctgcatggcagc
ttcgttctggtgcggatgcgcaatgaccgcgacgggggtaagcggacgaattggctgctg
atcaaacatcgcgacgacttctctgttgaagaaaagggcgccgctgtcctcgacgaaaac
gacacgtcggtggcctcgggccgaactatggaggcgatcgccgctggcaagggcaggaag
ccaaaaccgttcatggtgcagagcggcgacgtccaggcggatgccgtttgggacagcaat
catggactagcggcggaggaacgtgcctcggacacgaaagcaaagcgaaagccagcattg
aaaaaaccagcgaagtcgacaatgccggagttcataccgccgcagctttgcgaaacgctc
gatcgcccgccttcagccaagggctggatccacgagatcaagttcgacggctaccgcatc
cagacccgcatcgaaaacggtgaggtgacgcttaaaacccgcaagggcctggactggacg
gccaagtatccggcgattgcgacatcggccgcaaacttacctgatgccattatcgacggg
gagatttgcgcgctcgatgaaaacggtgcgccggacttcgcagcacttcaggccgcactg
tcggaaggcaagaccgacgaactggtctatttcgccttcgatctgctgttcgaggagaac
gaggatctacgacaactgccgttgaccgaacgcaaggaacgcctgcagacactgcttgat
gatgccggcgaggacccacgcctgcgtttcgtcgaacatttcgaaaccggtggcgacgcc
gtcctgaagtcggcctgcaagctctcgctggaaggcattgtttcgaagcaggcggatgca
ccctatcaatccggccgcaccgagacctgggccaaatccaaatgccgcgccggccacgaa
gtggtcatcggcgcctatgccaagaccaacggcaagttccgctcgctgctggtgggagtc
ttcaagggtgatcacttcgtctatgtcggccgcgtcggaactggctacggggccaaaacg
gtcgacacgatcttgccgaggctccgggaactggaaacctcaaagtcgccctttaccggg
attggcgccccaaagaaggatcccaacgtggtctgggtcaaacccgaactggtcgcggag
atccagttcgccggctggactgcggatggcctcgtccgccaggcggcgttcaagggattg
cgcgaggacaagcctgcacacgaagtcgaggcagaaaagccggcatcgccggcaaagact
gataccccgacgccggccaagtcaaagccatcaaggccggcacgcggcaaaaacgccaag
gccgaggtgatgggcgtgatgatttccagcccggacaaagcgctctggcccgatgccaat
gacggagagccggtgaccaaggaagatcttgcgcgctatcatgaggccgtcggtccatgg
ctgatcgaccatatcaagggacggccatgctcaatcatccggacgcccgacggcatcggt
ggagaggtgttcttccagagacacgcgatgccgggaacgtcgaacctgatcgagctggtc
aaggtgttcggcgacaagaaaccctatctgcagattgatcgcgttgagggccttgccgcc
attgcccagatcggcggcgtcgaactgcacccgtggaattgcgagccgggtcaaccggag
gtgccgggccgtcttgtcttcgaccttgatccgggtccggacgtccccttctcaaccgtg
gtggaagccgctcgggagatgcgcgaccggctggaggaacttggcctcgtcagcttctgc
aaaaccaccggaggcaagggccttcacgtcgtaacgccgcttgcggtaccgaagggaaag
aagctgagctggccggaggcgaaaggcttcgcacacgatgtctgcatgcagatggcacgc
gagaccccggagctttatttgatcaagatggccaagaaccagcgcaacggtcggatcttc
ctcgactacctgcgcaatgaccgaatggcgactgctgttgcgccgctgtcaccgcgcgcg
cgggcaggcgcaccagtatcgatgccactgagctggaagcaggtaaaaacggatctcgat
ccgaaacgcttcaccattcgcaccgtaccggcgctgttgtcgaagacgaccgcctggcag
gattactgcgacgggcagcgttcgctggagcaggccatcaaacgattggcgaagtcgatg
aaacaggctgcctaa
DBGET
integrated database retrieval system
