Pseudazoarcus pumilus: C0099_08085
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Entry
C0099_08085 CDS
T05265
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
atw
Pseudazoarcus pumilus
Pathway
atw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C0099_08085 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atw03400
]
C0099_08085 (mfd)
Enzymes [BR:
atw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C0099_08085 (mfd)
DNA repair and recombination proteins [BR:
atw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C0099_08085 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
AAA_16
DUF4217
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AUN94892
UniProt:
A0A2I6S6K9
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All DBs
Position
1674524..1677991
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AA seq
1155 aa
AA seq
DB search
MPLSTDPLLPDLAALPIPKPGTRITLPRLSGSSDALAIAHFASRGRTLLVVCANPPDAQR
MQEELAWLAPELRAHLLPDWETLPYDSFSPHQDLISERLATLYSLARGETDVVLVPASTA
LYRMAPPSFLAAYTFFLKQGERLDIDKLRMQMAIAGYAHVTQVVSPGEFSVRGGIIDLYP
MGSSLPLRLDLFDDEIESIKTFDPDTQRTVYPVPEIRLLPAREFPLDEKARLAFRSRFRE
TFEGDPSRVQLYKDVSNGIAPAGVEYFLPLFHDETATLFDYLPRDAAVVLHHDVPTAIDE
FWRDTRLRHDFYKGDRSRPVMPPEALFLGQEDFFVALKALPGLEIRVDDAAVDEQATRST
EAPPPIGVERKAANPLHKLAALLDSDWAQAGGRILLLAESPGRRETMAEYLAEYGLKPAA
CDGFEDFVTSGSRFALGISPLLNGFVLPGARIAVVTEAELYAATARPRGRRESRKAATVE
GWLRDLSELKPGDPVVHVSHGIGRYTGLVHMDLGEGDTEFLHLEYANGDKLYVPVSQLHM
ITRYAGADPEAVVPHRLGSGQWEKAKRRAAQQVRDTAAELLVLYAQRESRPGHRFDFKQH
DLEAFAEGFGFETTPDQQAAIDAVVTDMKSGRPMDRLVCGDVGFGKTEVALRAAFVAVAD
SKQVVVLAPTTLLAEQHYQTFADRFADWPVRVAELSRFKSAKEQNEALAQLAEGKLDIII
GTHRLLQKDVRFQRLGLVIIDEEHRFGVRQKEAMKRLRAEVDVLTLTATPIPRTLGLALE
GLREFSIIATAPQKRLAIKTFVHAHSKGIVREAVLREFKRGGQVYFLHNEVDTIENMRNR
LAELVPEARISVGHGQLPERELERVMREFTQQRTNLLLCTTIIETGIDIPSANTIIINRA
DRFGLAQLHQLRGRVGRSHHQAYAYLLTDADAKPSTAARKRLEAITAMEELGSGFYLAMH
DLEIRGAGEVLGENQSGEIQQIGFSLYSEMLKRAVRDLQEGREPNLADPLETVSEINLHV
PALLPNGYCPDVQERLTLYKRLANCDTEDELRDLREELTDRFGEMPEQTQALIETHRLRI
ALKPWNVQKLDASEHQIAVQFGPDAPIDPAKVIALIQRDRNTRMAGQDKLVQKIALPALR
LRAAAVRELLESVRA
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgcccctcagcaccgatccgctgctgcccgatctcgccgcgctgccgattcccaaaccg
ggaacgcgcatcacgctgccgcgtctctccggctcatccgacgcactcgcgatcgcgcat
ttcgcctcgcgcgggcgcaccttgctggtggtgtgcgcgaacccgcccgacgcgcagcgc
atgcaggaggaactcgcctggctcgcgccggaactgcgcgcccacctgctgccggactgg
gagacgctgccctacgacagcttctcgccgcatcaggacctgatctccgagcggcttgcc
acgttgtactcgctcgctcgcggcgagaccgacgtggtactggtgccggcctcgaccgcg
ctctaccgcatggcgccgccgtccttcctggcggcctacaccttcttcctgaaacaggga
gaacggctcgacatcgacaagctgcgcatgcagatggccattgccggctacgcccacgtc
acgcaggtggtcagtcccggtgaattctcggtgcgcgggggcatcatcgacctgtacccg
atggggtcatccctgccgctgcggctcgacctgttcgacgacgagatcgagagcatcaag
accttcgacccggatacccagcgcacggtctatccggtgcccgagattcgtctgctgccg
gcgcgtgaattcccgctcgacgaaaaggcacgcctggcctttcgcagccgcttccgcgag
accttcgaaggcgacccgtcgcgcgtgcagctctacaaggacgtgtccaatggcattgca
cccgccggcgtcgaatacttcctgccgctgtttcacgacgagaccgcgacgctgttcgac
tatctgccacgcgacgcggcggtggtactgcaccacgacgtacccaccgcgatcgacgaa
ttctggcgcgacacgcgcctgcgtcacgacttctacaagggcgatcgcagccgcccggta
atgccccccgaggcgctgttcctcggccaggaagacttcttcgtcgcgctcaaggccctg
cccggcctggagattcgcgtggatgacgccgcggtcgacgaacaggcgacacgcagcacc
gaggcgccgccgcccatcggcgtcgagcgcaaggccgccaacccgctgcacaagctcgcc
gcgctgctcgacagcgactgggcgcaggccggcggtcgcatactgctgctggccgaatcg
ccgggccggcgcgagaccatggccgaatatctggccgaatacggactgaagcccgccgcc
tgcgacggtttcgaggatttcgtcacctccggctcgcgcttcgccctgggaatttctccg
ctgctgaacggtttcgtcctgccgggagcacgcatcgccgtcgtcaccgaagccgagctc
tacgccgccacggcgcgtccgcgcggccggcgcgaaagccgcaaggccgccaccgtcgag
gggtggctgcgcgatctgtccgaactcaagccgggcgatccggtggtacatgtgtcgcac
ggcatcggccgctacaccgggctggtgcacatggatctgggcgaaggcgacacggagttc
ctgcatctggagtacgccaacggcgacaagctctacgtgccagtgtcccagctgcacatg
atcacgcgctacgccggcgccgatccggaagcagtcgtgccgcaccgcctgggctccggc
cagtgggaaaaggccaagcgccgcgccgcgcagcaggtgcgcgacactgcggccgaactg
ctggtgctctacgcacagcgggaatcgcgcccgggacatcgcttcgacttcaagcagcac
gacctcgaggccttcgccgaaggcttcggcttcgagaccacgccagaccagcaggccgcc
atcgatgcggtcgtcaccgacatgaagtccggtcgtccgatggaccgcctggtatgcggc
gacgtgggtttcggcaagaccgaggtcgcgctgcgcgcggccttcgtcgcggtcgccgac
agcaagcaggtggtggtgctggcaccgaccacgctgctggccgagcagcactaccagacc
ttcgcagaccgcttcgccgactggccggtgcgcgtggccgagctgtcacgcttcaagtcc
gccaaggagcagaacgaggcgctggcacagctggccgagggcaagctcgacatcatcatc
ggcacccatcgcctgctccagaaggacgtgcgtttccagcgcctgggcctggtcatcatc
gacgaggagcaccgcttcggcgtacgccagaaagaggcgatgaagcgcctgcgcgccgag
gtcgacgtgctcacgctcactgccacgccgattccgcgcacgctggggctggcgctggag
gggctgcgcgagttttcgatcatcgccaccgcgccgcagaaacggctggccatcaagacc
ttcgtgcatgcgcacagcaagggcatcgtgcgcgaagcggtgctgcgcgagttcaagcgc
ggcggccaggtgtatttcctgcacaacgaggtcgacaccatcgagaacatgcgcaaccgt
ctggccgagctggtgcccgaggcgcgcatttcggtcggccacggccagttgcccgagcgc
gagctcgagcgcgtgatgcgcgaattcacgcagcagcgcaccaatctgctgctgtgcacg
accatcatcgagaccggcatcgacattcccagcgccaacaccatcatcatcaaccgcgcc
gaccgattcggcctggcgcagttgcaccagttgcgcggtcgcgtcgggcgcagccaccac
caggcttacgcctacctgctgaccgacgccgacgccaagccctcgaccgccgcccgcaaa
cgtctggaggccatcaccgcgatggaggaactgggctcggggttctacctggcgatgcac
gacctggagatccgcggcgccggcgaagtgctgggcgagaaccagtccggcgagatccag
cagatcggcttctcgctctacagcgagatgctcaagcgcgccgtgcgcgacctgcaggaa
ggtcgcgagcccaatctcgccgacccgctcgagaccgtctcggagatcaacctgcacgtg
cccgccctgttgcccaatggctactgccccgacgtgcaggagcggctcacgctctacaag
cggctggccaactgcgacaccgaggatgagttgcgcgatctgcgcgaggaactgaccgac
cgcttcggcgagatgcccgagcagacccaggcgctgatcgaaacccaccgcctgcgcatc
gcactcaagccctggaacgtacagaaactggacgcctcggagcaccagatcgccgtgcag
ttcggcccggatgcacccatcgacccggccaaggtcatcgcgctgatccagcgcgaccgc
aatacgcgcatggccggccaggacaagctggtgcagaagatcgccctgcctgcgctgcga
ctgcgcgccgccgccgtacgggaactgctcgaatcggtcagggcctga
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