Acidiferrobacter thiooxydans: A9R16_002710
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Entry
A9R16_002710 CDS
T07877
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aty
Acidiferrobacter thiooxydans
Pathway
aty03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aty00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A9R16_002710 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aty03021
]
A9R16_002710 (rpoC)
03400 DNA repair and recombination proteins [BR:
aty03400
]
A9R16_002710 (rpoC)
Enzymes [BR:
aty01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A9R16_002710 (rpoC)
Transcription machinery [BR:
aty03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A9R16_002710 (rpoC)
DNA repair and recombination proteins [BR:
aty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A9R16_002710 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UEO00329
LinkDB
All DBs
Position
540301..544506
Genome browser
AA seq
1401 aa
AA seq
DB search
MKDLFNLFKQAGKTEDFDSIRIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRMGLVLDMTLRDIERVLYFEAYVVVDPGMTPLERSQLLSEDSYLEAIEQYGDEFDARM
GAEAVRDLLRGIDLAGEAAKLREELGGTTSETKIKKLAKRLKVIEAFLHSGNRPEWMVIE
ILPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGKAITGANKRQLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPA
LKLHQCGLPKKMALELFKPFIFSKLEMRGLATTIKAAKKMVEQASPEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLVCAPYNADFDGDQMAVHVPLSLEAQLEA
RSLMMSSNNILSPANGEPIIVPSQDIVLGLYYMTRVRVNALGEGKVFADVAEVHRAYESR
KVALHAKCRVRIPEVTIDDAGNKVKTIKLVETTVGRALLSELLPDGLPFALVNRDLKKKT
ISELINACYRQVGLKETVIFADQLMYTGFAFAARAGISIGVNDMVTPAEKAKIIGDAEAE
VRGIQTQYASGLLTDGERYNKVVDIWTHTSERVAKSMMDKLGVEDVVDATGKTVTQPSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVCQDLVVTEPDCGTQTGIRKSVIVEGGEVVVPLRESVL
GRVVIGDVVDPADNTVLVAHNALLDERKVRLLEERNIDQVIVRSPVTCETRYGICALCYG
RDLGRGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRATAVSGIEVKSNGSVRF
NNLKLIRHASGNNVAVSRSGELVVQDDHGRDRERYKVPYGAILNVSEGDKVKAGRVVANW
DPHTHPIITEVAGNVAFTDLIDGVTVNKQTDEVTGLSTYVVLDPKHRSGAKDIRPMIALL
DGKGKGLFIPGTDIPAKYMLPPGAIITVEDGLKVGVGDVLARIPQESSKTRDITGGLPRV
AELFEARKAKDHAILAETSGVVSFGKDTKGKQRLLITDKSGEEHEYLIPKGRHIMVFEGE
TVEQGEAIVDGPPVSSDILRLLGVEAMANFIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
KVRIIDAGDTQFLPGEQIERARLLDANEEVEAAGKRPATGERLLLGITKASLATESFISA
ASFQETTRVLTEAAISGKRDRLRGLKENVIVGRLIPAGSGLAHHQERKRKRADEKDEAAA
LREALLPMRDKGDGGDKAVSA
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctattcaatttgtttaagcaggcaggcaagaccgaggatttcgattccatc
cggatcggcctggcatccccggacaagatacgctcgtggtctttcggggaggtcaagaag
cccgagacgatcaattatcgtacgttcaagcctgagcgtgacgggctgttctgcgcaaag
atcttcggccccatcaaggactacgagtgcttgtgcggcaagtacaagcgcctgaagcat
cgcggcgtgatctgcgagaagtgcggggtcgaggtgacgctctccaaggtgcgccgggaa
cgcatggggcacatcgagctggcaagcccggtcgcgcacatctggttcctgaagtccctg
ccttcgcgcatgggcctggtcctcgatatgaccttgcgcgacatcgagcgcgtgttgtac
ttcgaggcctatgtagtcgtggacccgggcatgacgccgcttgagcgcagtcagctcttg
tcggaggattcctatctcgaggccatcgagcaatatggtgacgagttcgacgcgcgcatg
ggggccgaggcggtccgcgatcttttgcgcggcatcgatctcgccggagaggccgccaag
ctgcgcgaggaattgggcggcacgacctcggagaccaagatcaagaagctcgccaagcgc
ctcaaggtcatagaggcgttcctgcattccgggaaccgcccggaatggatggtcatcgag
atcctgccggtgctgccgccggagcttcggccgttggtgccgctcgatggcgggcggttt
gcgacctcggacctgaacgatctgtatcggcgcgtgatcaaccgcaacaaccgcctgaag
cggctcttggacctgaacgcccccgatatcatcgtgcgcaacgaaaagcgcatgctgcag
gaggcggtcgacgcactgctcgacaacgggcggcgcggcaaggcgatcaccggcgccaat
aagcgccagctgaagtcgctcgccgacatgatcaaaggcaagcaggggcgcttccggcag
aacctgctcggcaaacgcgtggactactcggggcgctcggtcatcgtggtcggccccgcc
cttaagctgcatcagtgcggtctcccgaagaagatggcgctcgagctcttcaagcccttc
atcttcagcaaactcgagatgcgcgggttggcgacgaccatcaaggccgccaagaagatg
gttgaacaggcgagccccgaggtctgggacatactcgaggaggtcattcgcgagcacccg
gtgctgttgaaccgggcgcccacgctccaccgcctgggcattcaggccttcgagcccgtg
ctcgtcgagggcaaggccattcagctccacccgctggtgtgcgcaccctacaacgccgac
ttcgacggcgatcagatggcggtgcatgtcccgctttcgttggaggcccagctcgaggca
cgcagcctcatgatgtcctcgaacaacattctgtcaccggcgaacggtgagccgatcatc
gtcccttcgcaggacatcgtgctcgggctctactacatgacgcgcgtacgcgtaaacgcc
ctgggcgagggcaaggtgtttgcggacgtggccgaggtgcatcgcgcctacgagagccgc
aaggtggcgctgcacgcgaagtgccgcgtgcgcataccggaggtcacgatcgatgacgcc
ggcaacaaggtgaagaccataaaactggtcgagacgaccgtgggccgggccctgctgtcg
gagcttctgccagacggcctcccctttgcgctggtgaaccgcgatttgaagaaaaagacc
atctcggagctcatcaatgcctgctaccggcaggtgggcctgaaggagaccgtgatcttt
gccgaccagctcatgtatacgggctttgcattcgcggcgcgcgccggcatctcgatcggc
gtgaacgacatggtgacgcctgccgagaaggccaagatcatcggggatgccgaggccgag
gtgcgcggtattcagacgcagtacgcgtctggactgcttaccgacggcgagcgctacaac
aaggtggtggacatctggacccacaccagcgagcgcgtggccaagtcgatgatggacaag
ctcggtgtcgaagacgtggtcgatgccaccggcaagaccgtcacccagccgtcgttcaac
tcgatctacatgatggcagactccggcgcgcgcggtagcgccgcccagattcgtcagctc
gccggcatgcgcggtctcatggccaagccggacgggtccatcatcgagacgccgatcacg
gcgaatttccgcgagggcctgaacgtattgcagtacttcatctcgacgcacggcgcgcgc
aagggcttggccgacactgccttgaagacggccaactccggctacctgacgcgccggctc
gtcgacgtgtgccaggacctggtggtcacggagcccgattgcggcacccagaccgggatc
cgcaagagcgtgatcgtggagggtggcgaggtggtggtgccgttgcgcgaaagcgtgctc
gggcgcgtggtcataggggacgtcgtcgacccggccgacaacaccgtgctggtggcgcat
aacgcgctgctcgacgaacgcaaggtgcgtctgctcgaggagcgcaatatcgatcaggtg
atcgtgcgctcgcctgtgacctgcgagacccgttatgggatctgtgcgttgtgctacggt
cgcgacctgggacggggtcatctcgtcaaccagggcgaggcggtgggcgtgatcgcggcc
cagagcatcggcgaacccgggacccagctcaccatgcgcaccttccacatcggcggtgcg
gcatcgcgcgccaccgcggtaagcgggatcgaggtcaagtccaatggttcggtgcgtttc
aacaacctgaagctgattcgccacgcgagcggcaacaatgtggcggtatcgcgttccggc
gagctcgtcgtgcaagacgatcacgggcgtgaccgcgagcgctacaaggtaccatacggc
gccatcctgaacgtgagcgaaggcgacaaggtcaaggccgggcgcgtggtggcaaattgg
gatccgcatacccatcccatcatcaccgaagtggccggcaacgtggccttcacggacctg
atcgatggcgtgacggtcaacaagcagaccgatgaggtgacggggcttagcacctacgtg
gtcctggatccgaagcaccgctcgggggccaaggacatccgcccgatgatcgcgcttttg
gatgggaagggtaagggtctcttcatacccggtaccgacatcccggccaaatacatgctg
ccgccgggcgcgatcatcaccgtcgaggatggactcaaggtcggggtgggcgacgtactc
gcccgcatcccgcaggagagctccaagacacgtgacatcacgggagggttgccgcgcgtg
gctgagctcttcgaggcgcgcaaggccaaggatcacgcgatcctggcggagacgagcggt
gtggtgtcgtttggcaaggataccaagggcaagcagcggcttttgatcaccgacaagagc
ggcgaggaacacgaatacctgattccgaagggccgccatatcatggtgttcgagggcgag
actgtggagcagggcgaggccatcgtcgacggtcccccggtgtcgtcggatatcctgcga
ttgctcggtgtcgaggccatggccaacttcatcgtggatgaggtccaggacgtgtatcgg
ctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgtgcgccagatgctgcgc
aaggtgcgcatcatcgatgccggcgacacccagttcctgcccggcgagcagatcgagcgg
gcgcgcctgctggacgccaacgaggaggtggaggcggccgggaagcggccggccaccggc
gagcgcctgctgctcggtatcaccaaggcatcgctcgctaccgagtcgttcatctcggcg
gcgtccttccaggaaacgacgcgggtcctgaccgaggctgccataagcggcaagcgcgat
cggctgcgcggtttgaaggagaatgtcatcgtcggtcgtctgatcccggccggcagcggg
cttgcgcaccatcaggaacgcaagcgcaagcgcgccgacgagaaggatgaggccgcggcc
ctgcgcgaggccctgttgccgatgcgtgacaagggcgacggcggcgacaaggcggtgtcg
gcctaa
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integrated database retrieval system
