Aurantimonas sp. HBX-1: LXB15_07060
Help
Entry
LXB15_07060 CDS
T07802
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aub
Aurantimonas sp. HBX-1
Pathway
aub03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LXB15_07060 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aub03400
]
LXB15_07060 (ligD)
Enzymes [BR:
aub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LXB15_07060 (ligD)
DNA repair and recombination proteins [BR:
aub03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LXB15_07060 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UIJ74068
LinkDB
All DBs
Position
complement(1486262..1487266)
Genome browser
AA seq
334 aa
AA seq
DB search
MIARSQTPTPRDRRQPQLPFDPMPDRIEPCLALLAATPPVGAEWAYEIKWDGYRLAVHVD
RGQARILTRGGHDWSHRFPAIAKAAVALAAPSLILDGEAVVLDSQGRSDFAALQQALGGR
GGKRIAGDEIIFYAFDLLYFDGHDISGMALIERRHLLEDLLRGETGTIRLSEEVQAEGAD
LLRIACQHGLEGIIAKNREAPYRSGRRGDWLKIKCIQSDSFVVIGYEPSSKAYGAIASLL
LAAQSDEGLVYVGSVGTGFKGGQVRELKQQLDAMRTERPHYAPRERKLVIARPELVAEIE
YRGWTGDQKLRHASFKGLREVADHADIFHLPSPA
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
ataattgcacgcagccagactccgacgcctcgcgatcggcgccagccgcagctaccgttc
gatcccatgccggatcggatcgagccctgtcttgcgctgctcgcggcaacgcccccggtg
ggagcggagtgggcctacgagatcaagtgggacggctaccggttggcggtccatgtcgat
cgcgggcaagcgcgcatccttacccgcggcggccatgactggtcacaccgctttcctgcc
atcgccaaggcggccgtcgcgctcgctgccccttccctcatcctggacggagaggctgtg
gtcctggacagtcagggtcgttcggacttcgctgcgcttcagcaggctctcggcggacgc
ggcggcaaacggatcgccggagacgagatcatcttctacgccttcgacctgctctatttc
gacgggcacgacatctccgggatggcgctcatcgagcggcgtcacctgctcgaagatctg
ctccggggggagacgggcacgatccggttgtcggaggaggtccaggccgagggtgcggat
ctgctgcggatcgcctgccagcatggattggaagggatcatcgcaaagaaccgcgaggcg
ccctaccgaagcggccgccgtggcgactggctgaagatcaagtgcatccagagcgacagc
ttcgtcgtcatcggctacgagccctcgagcaaggcctacggtgctatcgctagtctgctc
ctggcagcccagagcgatgagggattggtctatgtcggctcggtcgggaccggcttcaaa
ggcggtcaggtgcgcgagctgaagcaacagctagacgcgatgaggacggaacggccgcac
tacgcgccgagggagcgaaagctggtaatcgcgcgccctgagctggtcgccgagatagag
tatcgcggctggaccggcgaccaaaagctccgccacgcctcgttcaagggattgcgcgag
gtggcggatcacgctgacatctttcacctcccgtcgcccgcatga
DBGET
integrated database retrieval system
