Aurantimonas sp. HBX-1: LXB15_12510
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Entry
LXB15_12510 CDS
T07802
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aub
Aurantimonas sp. HBX-1
Pathway
aub03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LXB15_12510 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aub03400
]
LXB15_12510 (ligD)
Enzymes [BR:
aub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LXB15_12510 (ligD)
DNA repair and recombination proteins [BR:
aub03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LXB15_12510 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UIJ70576
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All DBs
Position
2645226..2647871
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AA seq
881 aa
AA seq
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MAARGDALLETYRKKRDFSKTQEPSGSEAPSKAADGLFFCVQKHDATRLHYDFRIEWEGV
LKSWAVTRGPSLDPADKRLAVRTEDHPMDYGTFEGTIPKGEYGGGTVMLWDQGTWEPLED
AEEGLAKGNLKMRILGERMNGNWALIRMKPRPGEKRENWLLIKEKDDAVDRRRNLLSADT
SIKTGRTMAAIAKGDDVWDNSRDDDQAAESAPKPAAKGRKNAAAAKPATAAKPAKSAAAP
KKKPAGKTLPLPRFVAPQLATLVDEAPDGRDWLHEMKYDGYRVMIAVGGGEVRCFTRNEK
DWTDRFAPIAEAARALDCRNALIDGEIVAFDANGGTDFSTLQAHLSDGGSLSCFCFDLLT
LDGADLTKRPLTERKAMLRDLIERTGSDVLLYSDHVTGNGPAVHDNICRAGHEGIVAKRA
DAPYRSGRTRSWLKVKCSRRQEFVIGGWRTSDKRGRPFASILLGVMEDGKLAYRGRVGSG
FDEANMADLAERFAAHKRMTSPFIALPTDARRGSRFVEPVLVAEIEFAEITADGSIRHGV
FKGLREDKEAGDVVDEHPQREGKAASAKRRAGKAAAKADTPELGQAPDSVAGVRLTHPER
VVFAGQGVTKGDLALYYEKVADRMLAHAGGRPLSLVRCPQGGQKRCFFQKHDTGGFPEAV
KTVPIPEKDGGIEHYLTVSDAAGLVGAVQMNTLEFHIWGSRNDRLEKPDRLIFDLDPDES
LGFEDVKAASFDLRDRLAELGLKSFPMVTGGKGVHVVVPLDRRQGWEEVKAFAKAFAVRQ
AEDEPDRFVATMSKAKRKGRIFIDWLRNERGSTAIAPYSSRSREGAPVATPVSWNELATL
SAANGFDINTVVARLDEPDPWADYADVRQSLTKKIRDKFGA
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggcggcccgcggcgacgcgcttctcgagacctaccgaaagaagcgggacttctcgaag
acgcaggaaccctccggctcggaggcccccagcaaggcggccgacggactgttcttctgc
gtccagaaacatgacgcgacgcggctgcattacgacttccgcatcgagtgggagggcgtg
ctgaagagctgggcggtcacccgcggccccagcctcgatcctgccgacaagcgcctggcg
gtccgcaccgaagaccatccgatggactacggcacgttcgagggcacgatccccaagggc
gagtacggcggcggcacggtgatgctctgggaccagggcacgtgggagccgctggaggat
gccgaggagggcctcgccaagggcaatctcaagatgcgcatcctcggcgagcgcatgaac
ggcaactgggccctgatccggatgaagccccggccgggcgagaagcgcgagaactggctg
ctgatcaaggagaaggacgacgcggtggaccgccgccgcaacctgctcagcgccgacacc
agcatcaagaccggccgcaccatggcggcgatcgccaagggcgacgacgtctgggacaac
tcgcgcgacgacgaccaagcggcggaatccgcgcccaagcctgccgcgaaggggcgcaag
aacgccgctgccgcgaagcccgcaacggccgcgaagccggcgaaatccgccgccgcacca
aagaagaagcccgcgggcaagacgctgccgctgccgcgcttcgtcgcgccgcagctggcg
acgctggtcgacgaggccccggacggccgcgactggctgcacgagatgaaatatgacggc
taccgggtgatgatcgccgtcggcggcggcgaggtccgctgcttcacccgcaacgagaag
gactggaccgaccgcttcgcgccgatcgcggaggccgcacgggcgctcgactgccgcaac
gcgctgatcgacggcgagatcgtcgccttcgacgcgaacggcggcacggatttctcgacg
ctgcaggcgcatctctccgacggcggatccctctcctgcttctgcttcgacctgctgacg
ctcgacggcgcggatctgaccaagcgcccgctcaccgagcgcaaggcgatgctgcgcgac
ctcatcgagcgcaccggctcagacgtcctgctctacagcgaccacgtcaccggcaacggc
ccggcggtgcacgacaatatctgccgcgccggccacgagggcatcgtcgccaagcgcgcc
gacgcgccctatcgctcgggccgcacccgcagttggctgaaggtcaagtgctcgcgccgc
caggaattcgtcatcggcggctggcggacgtcggacaagcgcggccggcccttcgcctcg
atcctgctcggcgtcatggaggacggcaagctcgcctatcgcggccgcgtcgggtcgggc
ttcgacgaggccaacatggccgaccttgccgagcgcttcgccgcccacaagcgcatgacc
tcgccgttcatcgcgctgccgaccgacgccaggcgcggctcccgcttcgtcgagccggtg
ctggtcgccgagatcgagttcgccgagatcaccgccgacggctcgatccgccacggcgtg
ttcaagggcttgcgcgaggacaaggaggccggtgacgtggtggacgagcatccgcagcgc
gagggcaaggcggcgtcggcgaaacggcgcgccggcaaggccgcggcaaaggccgatacg
ccggagctgggccaggcgcccgacagcgtcgccggcgtccgcctcacccatcccgagcgc
gtcgtcttcgccggccagggcgtcaccaagggcgacctcgcgctctactacgagaaggtc
gcggaccgcatgctcgcccatgccggcggccggccgctatcgctggtgcgctgcccgcag
ggcggccagaagcgctgcttcttccagaagcacgacaccggcggcttcccggaggcggtg
aagaccgtgccgatcccggaaaaggacggcgggatcgagcactatttgacggtctccgac
gccgccggcctcgtcggggcggtgcagatgaacacgctggagttccacatctggggctcg
cgcaacgaccggctggaaaagcccgaccggctgatcttcgatcttgacccggacgagagc
ctcggcttcgaggacgtcaaggcggcgtccttcgacctgcgcgaccggcttgccgaactc
ggcctgaagagctttccgatggtaaccggcggcaagggcgtccatgtcgtcgtgccgctc
gaccggcgccagggctgggaagaggtcaaggccttcgccaaggccttcgccgtccgccag
gcggaggacgagccggaccgcttcgtcgccaccatgtcgaaggccaagcgcaagggccgg
atcttcatcgactggctgcgcaacgaacgcggctcgacggcgatcgcgccctattccagc
cgctcccgcgagggtgcgccggtggcgacgccggtcagctggaacgagctggcgacgctt
tccgccgccaacggcttcgacatcaataccgtcgtcgcgcggctggacgagcccgatccg
tgggccgactacgccgacgttcgccagtcgctgaccaagaagatccgagacaagttcggc
gcctga
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