Auritidibacter sp. NML130574: DCC27_000275
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Entry
DCC27_000275 CDS
T05590
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aul
Auritidibacter sp. NML130574
Pathway
aul03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aul00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DCC27_000275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aul03021
]
DCC27_000275
03400 DNA repair and recombination proteins [BR:
aul03400
]
DCC27_000275
Enzymes [BR:
aul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DCC27_000275
Transcription machinery [BR:
aul03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DCC27_000275
DNA repair and recombination proteins [BR:
aul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DCC27_000275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AXR72994
LinkDB
All DBs
Position
47049..50564
Genome browser
AA seq
1171 aa
AA seq
DB search
MVASSTSNNSAATNPRHAASAGRVSFAKIAEPLDVPDLLALQTESFDRLVGNERWKQRVA
HAQEIGDDSVATTSGLSDIFEEISPIEDFQGTMSLSFTDPEFSDPKVTENEAKEKDSSYA
APLYVKAEFMNYNTGEIKQQTVFMGDFPLMTEEGTFIINGTERVVVSQLVRSPGAYFERH
PDKTTDKDVYSARIIPSRGAWFELEIDRRDQVSVRLDRKRKQPVTVLLKALGWSESRILE
EFGQYDSMRLTLEKDQTEDQKAALLDIYRKLRPGEPAAVDPAQTLLANLYFTEKRYDLAK
VGRYKLNRKLGVDAPLSDPASSVLTEQDVAQMIHFICALHAGEKTIKGQHNGEEVDIRVE
MDDIDHFGNRRIRAVGELIENQIRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVAS
IKEFFGTSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPI
ETPEGPNIGLIGSLATFGRINAFGFIETPYRKVIDGKVTDRVEYLTADDELDAQIAQANA
VLNEDSSFAEEQVLCRQRGGDGEPVLAEPSDIDYMDVSPRQMVSAATALIPFLEHDDANR
ALMGANMQRQAVPLLKSEAPLVGTGMEKYVALDAGDSVTATKPGVVTEASADMVTVMNDD
GTTTHYKIQKFARSNQGNAYNQQVRVAEGDRVETMSVIADGPATDNGELALGKNLLVAFM
PWEGLNYEDAIILSQRMVSDDVLTSIHIEEYEIDARDTKLGAEEITRDIPNVSEEVLSQL
DERGIIHIGAEVEAGDILVGRVTPKGETELTPEERLLRAIFGEKSKEVRDTSKKVPHGES
GTVIGIRILDREDDDDLPVGVNQLVRVYVAQKRKITDGDKMAGRHGNKGVISKILPVEDM
PFLADGTPVDIILNPLGVPGRMNLGQVMELHLGWIAANGWKIEGEPEWLRNLPNLPRETG
PLNVATPVFDGAEAEEIQGLLQSVNPSRDGERLMGENGKAQLFDGRSGEPFPDPISVGYM
YMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEL
LTHKSDDVHGRVKVYEAIVKGENIPEPGVPESFRVLVKEMQSLCLNVEVLSSEGQAIEMR
DSDEESFRAAEELGIDLSHAEPDSVDTIGEV
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
ttggtcgcttcgagcacctcaaataattcagccgctaccaatcctcgccacgccgcctct
gcaggccgagtttctttcgcgaagattgccgaacctctggacgtgcccgacctgttagca
cttcagaccgaatctttcgaccgcttggtcggtaacgaacggtggaaacagcgtgttgcg
catgcccaggaaatcggtgatgattcggtagctaccacatccgggctctccgatattttc
gaggaaatctcacccattgaggatttccagggaacgatgtcgctgtcgttcactgatccg
gaattctctgaccctaaggtcaccgaaaatgaagcgaaggagaaagactcctcttacgct
gctccgctgtacgtcaaggcggagtttatgaactacaacaccggtgaaattaagcaacag
acggtgttcatgggtgacttcccgttgatgactgaagaaggcaccttcatcatcaacggc
actgaacgtgttgtggtttcccagctggtgcgttccccgggtgcctatttcgaacgccac
cctgacaagaccaccgataaggacgtctactcggcccggattatcccgtcccgtggtgcc
tggtttgagctggagattgaccgtcgcgaccaggtctcggtgcgcctggatcgtaagcgc
aagcaaccggtgactgtgttgctcaaggccctgggctggtcggagtcccggattctcgaa
gaattcggtcaatatgactccatgcggttgaccctggaaaaggaccaaaccgaagaccag
aaggcagccctgctggacatttaccgcaagttgcgtccaggtgaaccggcagctgtggat
ccagcccaaactctgctggctaacctgtacttcactgagaaacgctacgatctggctaaa
gtgggtcggtataagctcaaccgcaagctcggcgtcgacgctccgttgtccgaccccgca
tcgagcgtgttgacggagcaggatgtggcgcagatgattcacttcatctgtgctctgcac
gctggcgagaagaccatcaagggtcaacacaacggtgaagaggtcgatattcgcgtcgag
atggacgatatcgaccacttcggtaaccgtcgcattcgcgccgtcggcgagttgattgaa
aaccagatccgcaccggtctggctcgtatggagcgcgtggtgcgcgagcggatgaccacc
caggacgttgaggctattacccctcagactttgattaacatccgtcctgtggttgcttcc
atcaaggagttcttcggaacctcccagctttcgcagttcatggaccagaacaacccactg
gccggtctgacccacaagcgtcgtctctccgccctgggcccaggtggtctgtctcgtgat
cgcgcgggaatggaagtccgcgacgtccacccctcgcactacggtcgtatgtgcccgatt
gagaccccagaaggtcccaacattgggctgattggttcgttggcaaccttcggtcggatc
aacgccttcggtttcattgagaccccgtaccgcaaggtcattgacggtaaggtcactgac
cgtgttgagtacctcaccgctgatgacgagctggacgcccagattgcccaggctaacgcg
gtgctgaacgaggatagctctttcgctgaagaacaggtcttgtgtcgtcagcgcggtggt
gacggtgaaccggtactggctgaaccgtccgatattgactacatggacgtctccccacgt
cagatggtctcggcagccaccgccctgatcccgttcttggagcacgacgatgctaaccgc
gcgctgatgggtgcgaacatgcagcgtcaggcggtgccactgttgaagtctgaagcgccg
ttggtgggtacgggtatggagaagtacgtcgcgctggacgctggcgactccgtgaccgcc
accaaacccggtgttgtcaccgaggcttccgccgacatggtgaccgtgatgaacgacgat
ggcactaccacccattacaagatccagaagttcgctcgctccaaccagggcaacgcctac
aaccagcaggtgcgcgtggccgaaggtgatcgggtggagactatgtcggtcatcgctgat
gggcccgccaccgataacggtgagctggccctggggaagaacctgctcgtggcattcatg
ccgtgggaaggcctcaactacgaggatgcgatcatcctctcccagcgcatggtttccgat
gacgtgctgacctcgatccacattgaggagtacgaaatcgatgcccgtgacaccaagctg
ggcgctgaagagatcacccgcgacatccccaacgtctccgaggaagtgctgtcacagctt
gacgagcgtggcatcatccacatcggtgccgaggtcgaggccggggacatcctggtcggt
cgcgtcactccgaagggtgaaaccgagctgacccccgaagagcgcctgttgcgcgccatc
ttcggcgagaagtccaaggaagttcgtgacacctctaagaaggttccgcacggtgaatcc
ggaaccgtgatcggtatccgcatcctggaccgcgaagacgacgatgatctgccggttggt
gtcaaccagctggtccgtgtctacgtggctcagaagcgtaagatcaccgatggtgacaag
atggctggtcgtcacggtaacaagggtgtgatctccaagatccttcccgtggaagatatg
ccgttcttggccgacggtactccggtcgatatcattctgaacccgctaggtgttccgggt
cgtatgaacctcggccaggtgatggaactacacctgggctggattgcggccaacggctgg
aagatcgaaggcgagcccgagtggttgcgcaacctgcccaacctgccacgtgagaccgga
ccactgaacgtggctaccccggtcttcgacggtgctgaagccgaagagattcagggactg
ctgcagtcggtgaatccttcacgcgacggtgaacgcctgatgggtgaaaacggcaaggcg
cagctgttcgatggtcgttccggtgaacccttcccggacccaatctcggtcggctatatg
tacatgctgaagttgcaccacctggtggacgacaagattcacgcccggtccacgggcccg
tactcgatgattacccagcagccgctgggcggtaaggcgcagttcggtggtcagcgcttc
ggtgaaatggaagtgtgggcgctggaggcctacggtgctgcctacacgctgcaggagttg
ctcacccacaagtccgatgacgtgcacggtcgtgtgaaggtctacgaggccatcgtcaag
ggtgaaaacattcctgagcccggcgttccggaatcgttccgtgtgctggtcaaggaaatg
cagtcactgtgcctgaacgttgaggtcttgtcctctgaaggccaggccattgaaatgcgg
gactcggatgaggagtcattccgggccgctgaagaactcggtatcgatctctcccacgca
gagcccgactctgtggataccatcggggaagtctaa
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