Auritidibacter sp. NML130574: DCC27_005950
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Entry
DCC27_005950 CDS
T05590
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aul
Auritidibacter sp. NML130574
Pathway
aul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DCC27_005950 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aul03400
]
DCC27_005950 (mfd)
Enzymes [BR:
aul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DCC27_005950 (mfd)
DNA repair and recombination proteins [BR:
aul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DCC27_005950 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
DUF3638
LytR_C
Motif
Other DBs
NCBI-ProteinID:
AXR75081
LinkDB
All DBs
Position
complement(1307014..1310502)
Genome browser
AA seq
1162 aa
AA seq
DB search
MTATHREAEELRSAVTSWMDADTVGLFPSWETLPHERLSPRSDTVGERLAILRRLAHPQD
AGQAPLKVLFAPIRSILQPVVKGLGDLTPVVINTGEFYEFESVVAALAHAAYSRVDMVTK
RGEFAVRGGIIDVFPPTEDHPQRIEFFGDEVEEIRWFSVADQRSLEDTSNDGSATPTSVY
APPCRELLLTDAVREKARALQASMPQAVDMLERISQGQATEGMESLAPLVTEMVDFLDLL
PAGSLSLLIEPEKIRARAEDLLATNEEFLQAAWAAAADGVAAPLDTSQTEQSQFGGFATL
AETRAKALENHQGWWQFAVLGADPDLIADEQSYRTGFRPSAEFSGDVEAMLEHMRTRISQ
DFTVAVATDSSGSARRVAELLVQAGMSASVVEEVAAELPGQVQITPAAINAGFVAEAEKI
AVVSERDLFGRRAIAGSERGKRRSLARKKRNAVDPLELREGDYVVHAQHGIAKFIELQRR
KVSTAPSGVAAQDGYREYLVLEYAPSKRGAPGDRLFVPTDQLDQVSQYVGGETPSLSKMG
GSDWAQTKSKARRATREIANELIRLYSARMASRGYSFSADTPWQRELEESFPFIETPDQL
TAIDEVKHDMQSQVPMDRLISGDVGFGKTEVAVRAAFKAVQDGKQVAVLVPTTLLARQHH
ETFTERFAGFPITVRPLSRFQTGKQARDTINGVADGSVDVVIGTHRLLADQVQFKDLGLV
IVDEEQRFGVEHKEQLKKLRTNVDVLAMSATPIPRTLEMSMTGIRETSTLATAPEERHPV
LTTVGPYTDQQVIAAIRREMMREGQVFYVHNRVTSINKVAAHIQQLVPEARVAVAHGKMA
ESTLEEIMVKFWEKEFDVLVSTTIIETGLDIANANTLIIEDAHRYGLSQLHQLRGRVGRG
RERAYAYFLYDPHKPLTETALERLRAVATHNELGSGLKLAQKDLEIRGAGNLLGGEQSGH
IAGVGFDLYIRMVGEAVADFKGEDDPSPVEVKVELPVNAHLPHDYVPGERLRLEAYRNLA
QAHDDQAIEAVIDELKDRYGDLPEPAENLVAVARLRNVARGHGISEIMSMGRNIKFGPVE
ELPESRVMRLNRMYPGSSLKPALKAVMVPRPKDAQTVVGKDLTDQPLLQWASELVRNIFP
QVAKNSPEEGGSSQESGVTEGN
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgaccgctacccaccgtgaggccgaggaactacgctcagccgtgacctcgtggatggat
gctgacactgtcgggttgtttccctcctgggagacgttgcctcatgagcgactctcgcca
cgttcggatacggtcggtgaacggctggcgatcttgcgccgcctggctcacccacaggat
gccgggcaggccccgctgaaagtgctcttcgccccgatccgttcgatcctgcaaccggtg
gtcaaaggactcggcgacttaacgccggtggtgatcaacaccggtgaattctacgagttt
gagtccgtggtcgctgcgttggctcatgccgcctactctcgggtggatatggttaccaag
cgcggtgaatttgcggtacgtggtgggatcattgacgtcttcccacccaccgaagaccac
ccacaacgcatcgagttcttcggcgatgaagtcgaggaaatccgctggttctcggtggca
gaccagcgctccttggaagacaccagtaatgacggctcggccacccccaccagtgtgtat
gcgccaccgtgccgagaactgttgctcaccgacgccgtgcgcgaaaaagcccgtgcgcta
caagcctccatgccgcaagccgtcgatatgctggaacgcatctcgcaaggccaggccacc
gagggcatggaatcgctggcgccgttggtgaccgagatggttgacttcctagacctgttg
ccggctggatcgttgagcctgctgattgaaccggagaaaattcgagcccgggccgaggac
ctgttggccaccaacgaagaattcctgcaggcagcctgggcggctgctgccgacggggtg
gcagcaccgctggatacctctcaaaccgaacagtctcagtttgggggattcgccacgcta
gcggagacccgggccaaggcgctggagaatcatcagggctggtggcaattcgctgtgttg
ggtgctgaccccgatttaatcgctgatgagcagagctaccggaccgggttccggccctct
gcagaattctccggagacgtggaggccatgctagagcatatgcgcacccggatatctcag
gacttcactgtcgcggtggccaccgacagctccggttcggctcggcgcgtggccgagttg
cttgtccaagccggtatgagcgcctcggtggtcgaggaagtggccgcagaattgcccggc
caagttcagatcacgccagcagctattaacgccggtttcgtggcggaagcagaaaaaatc
gcggtggtatctgaacgtgacttatttggacgtcgtgcgattgccggatccgaacgcggc
aaacgtcgttctctcgcccggaaaaagcgcaacgcggtcgatcctctcgaactgcgcgaa
ggcgactacgttgttcacgctcagcacggcattgccaaattcattgaactacaacgtcgc
aaagtctccacggcaccatctggagttgccgcccaagatggttatcgggaatacctggtg
ttggaatacgctccctccaaacgcggtgctcccggagatcggctgtttgtgcccaccgac
cagctggaccaagtctcgcagtacgtgggaggagagactcccagcttgtcgaaaatgggc
ggctctgactgggctcagacgaagtccaaagcccggcgggcgacccgcgaaatcgccaat
gagctgatccggctctactcggcacgcatggcctctcgagggtactcgttctcggccgat
acgccgtggcagagagaactcgaagaatccttcccctttatcgaaacgcccgaccagctg
actgcaatcgatgaagtcaagcacgatatgcagtcgcaggttccgatggaccggctgatt
tccggggatgtaggcttcggcaaaaccgaggtcgccgttcgcgcagcgttcaaggcggtt
caagacggcaaacaggtggcggtgctggtgcccaccacgctgttggctcgccaacaccat
gaaacctttaccgagcgtttcgccggctttcccatcaccgtccggcctctttcacgtttt
caaaccggcaaacaggctagagacaccatcaacggtgtcgccgacgggagcgtcgatgtg
gtgatcggtactcaccggctgttggccgaccaggtgcagttcaaagatctcggcctggtg
attgtcgatgaggaacagcgcttcggcgtggaacacaaggaacagctgaagaaacttcgc
accaatgtcgatgtgttggccatgtcggcgaccccgatcccgcgcaccctggagatgtcg
atgaccgggattcgggaaacttcgacgctggccaccgccccggaggaacgccacccggtg
ctgaccacggtcggtccctataccgaccaacaggtgattgccgcgatacggcgggagatg
atgcgcgaagggcaggttttctatgtccacaaccgggtcacctcgatcaataaggtagcc
gcccacattcagcagctggtgcccgaagcgcgcgtcgcggtggctcacggcaaaatggct
gagtccaccttggaagagatcatggttaaattctgggagaaagagttcgacgtgctggtc
tcgaccaccatcattgaaaccgggctcgacattgccaacgccaacacgttgatcattgaa
gatgcccaccgctacgggctctcccagctgcaccagttgcgcggacgcgtgggacgtggt
cgagagcgggcctacgcttatttcctctacgatccacataaaccactgaccgagactgcc
ctggaacgactgcgggcggtggccacccataacgagttgggatcgggtctgaagctggcc
cagaaagacctggaaattcgtggggccggcaacctgttgggtggggaacagtccggccac
atcgccggggtgggattcgacctctatatccgcatggtcggggaagctgtggccgatttc
aagggcgaagacgatccttcgccggtggaggtcaaggtcgagctaccggtcaacgcgcac
ctgccgcatgattatgtccccggcgaacggctacgtttggaggcgtatcgaaacctggcc
caggcccacgatgaccaggctatcgaggcggtgatcgacgaactcaaggaccgctacggg
gacctaccagaaccggctgagaacttggtcgcggtggctcgattgcgcaatgtcgcgcgt
ggacacgggatctccgagatcatgtcgatgggcaggaacatcaagttcgggcctgtggaa
gagctccccgagtcacgtgtgatgcgcctgaacaggatgtatccaggttcgagtctcaaa
ccggctttgaaagccgtaatggtgccccggcccaaggacgctcagacggtggtcggtaag
gacctcaccgaccaaccactgttgcagtgggccagtgagctggtgcgcaatatcttccct
caggtggccaagaactcaccggaagaaggtggatcatcgcaggagtccggtgtgactgag
ggtaattag
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