Actinomyces urogenitalis: R3I39_08715
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Entry
R3I39_08715 CDS
T09523
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
auo
Actinomyces urogenitalis
Pathway
auo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
auo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R3I39_08715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
auo03019
]
R3I39_08715
03009 Ribosome biogenesis [BR:
auo03009
]
R3I39_08715
Enzymes [BR:
auo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R3I39_08715
Messenger RNA biogenesis [BR:
auo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R3I39_08715
Ribosome biogenesis [BR:
auo03009
]
Prokaryotic type
rRNA helicases
R3I39_08715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
Motif
Other DBs
NCBI-ProteinID:
WOO94757
LinkDB
All DBs
Position
2062042..2064552
Genome browser
AA seq
836 aa
AA seq
DB search
MSSTTGSTASSASSGQGDRPLSLDDLFNAEVAGASSQTPDEELDSFVESEDEPDDVDTAG
ELNLPENDPEDGSEPDEDDAEGEELEEDQVDGHLPFAPTSASAASADEAEQDDAADLKPE
DVTFADLGLPADLLKAVTDMGYVTPTAIQREAIPVLLSGRDVVGVAQTGTGKTAAFGLPL
LDAVDARDGEVQALVLAPTRELALQSAEAITDMASRSRGLDVVAVYGGAPYGPQIGALKS
GAQVVVGTPGRVIDLIDKGALHLGAVRYFVLDEADEMLRMGFAEDVETIAASLPAERRTA
LFSATMPPAIQAVARQHLSDPARVEVSRQSSTVDTVHQTYAVVPFRHKVGAVSRVLATTE
AEAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRSGTLDVLVATDV
AARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIERLT
GTRLEEITLPSPADVSRHRAATLLDKAAQRHERGRLEMYTEMVQGKAAELEIEVSDLAAT
LLALAVGDAGPKTWQERKEEPRQRVRREENVDSEGTFVSATFEGGRDRGERGRGRDRIEG
KPGASRGGRRHEDGTGTVYRVEVGHRDRVLPGAIVGALANEGGISGSDIGKIDILQSFSL
VEIHTPLSDEQLQAMGRATFGGRELRIHPDQGPGHGWDGSDNAPSEHSQRRAERPRREDG
GRGGYRSDRSERGRRGEGRGGYRSERGRRDEGRDGGRGGYREGRGGYRSDRGGREDRSER
GRRDEGRGGYRGERGGYRGERGRRDEGRGGYRSERAGRDGGRGGYRSDRGRDRDRW
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcaccactgggtccactgcatcttctgcctcctcgggccagggcgatcgcccc
ctgagcctggacgacctgttcaacgccgaggtagccggcgcctcctcccagaccccggac
gaggagctcgacagcttcgtcgagtccgaggacgagcctgacgacgtcgacaccgctggc
gagctgaacctgcccgagaacgatcccgaggacggctctgagcctgacgaggacgacgct
gagggcgaggagctggaggaggaccaggtcgacgggcacctgcccttcgcccccaccagc
gcctcggcggcctccgcggacgaggctgagcaggacgacgccgctgacctcaagcctgag
gacgtcaccttcgccgatctcggcctgcctgctgacctgctcaaggccgtgaccgacatg
ggctacgtcacccccaccgcgatccagcgcgaggcgatcccggtcctgctgtcgggccgt
gacgtcgtcggcgtggcccagaccggcaccggcaagaccgccgccttcggcctgccgctg
ctcgacgccgtcgacgcccgtgacggcgaggtccaggccctggtcctggcgcccacccgt
gagctggccctgcagagtgccgaggccatcacggacatggcctcacgctcacgcgggctc
gacgtcgtcgccgtctacggtggcgccccctacggcccgcagatcggcgccctgaagtcg
ggcgcccaggtggtcgtgggtacccccgggcgcgtcatcgacctcatcgacaagggcgcc
ctgcacctgggcgctgtgcgctacttcgtgcttgacgaggctgacgagatgctgcgcatg
ggcttcgccgaggacgtggagacgatcgccgcctccctgcctgccgagcgccggacggcg
ctgttctctgccaccatgccccccgccatccaggcggtggcccgtcagcacctgagcgac
ccggcacgggtagaggtctcgcgccagtcctcgaccgtggacacggtccaccagacctac
gccgtcgtgcccttccgccacaaggtcggcgcggtctcgcgagtcctggccaccaccgag
gctgaggccgccatcgtcttcgtgcgcaccaagtccacggccgaggacgtagccatcgag
ctggcaggccgagggatccaggccgctgcgatctccggcgacgtcccccagcgtgagcgc
gagcgcctcgtcgagcgcctgcgcagcggcaccctggacgtgctggtggccacggacgtg
gctgcacgtggcctggacgtggaccgtatcggcctggtcgtcaacttcgacgtacctcgt
gaggccgaggcctacgtccaccgcatcggccgcaccggccgtgccggccgccacggcgag
gcggtcaccttcctcacccccaaggagaagggcaagctccgccagatcgagcgtctgacg
ggcacgaggctggaggagatcactctgccctcccccgctgacgtctcacgccaccgcgcg
gccacgctgctggacaaggcggcgcagcgccacgagcgcggccggctggagatgtacacc
gagatggtccagggcaaggcagccgagctggagatcgaggtgagcgacctggcggccacg
ctgctggccctcgccgtaggcgacgccggtcccaagacctggcaggagcgcaaggaggag
ccgcgccagcgcgtgcgccgcgaggagaacgtcgactccgagggcaccttcgtctcggcc
acattcgagggcggacgtgaccgtggcgagcgtgggcgcggccgtgaccggatcgagggc
aagcctggcgccagccgcggcgggcgccgtcacgaggacggcaccggcacggtctaccgg
gtcgaggtcggtcaccgcgaccgcgtgctgcccggggcgatcgtgggcgcactggccaac
gagggagggatctccgggtcggatatcggcaagatcgacatcctgcagtccttctccctg
gtcgagatccacacaccgctgagcgacgagcagcttcaggccatgggacgggcgaccttc
ggcggccgcgagctgcggatccaccccgaccaggggccgggccacggctgggacggaagc
gacaacgctccctccgagcacagccagcgccgcgctgagcgtccccgccgtgaggacggc
ggacgcggcggctaccgttccgaccgctctgagcgcggccggcgtggcgaaggacgtggt
ggctaccgctctgagcgcggccggcgtgacgagggtcgcgacggcggacgcggcggctac
cgcgagggccgcggcggctaccgttccgaccgcggtgggcgcgaggaccgctctgagcgc
ggccggcgtgacgaaggacgtggtggctaccgcggcgagcgtggtggctaccgcggcgag
cgcggccggcgtgacgaaggacgtggtggctaccgctccgagcgcgcaggccgcgacggc
ggacgcggcggctaccgctcggaccgcgggcgtgaccgggaccgctggtaa
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