Austwickia sp. Fred_18-Q3-R57-64_BATAC.85v2: IPK37_06345
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Entry
IPK37_06345 CDS
T07017
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aus
Austwickia sp. Fred_18-Q3-R57-64_BATAC.85v2
Pathway
aus03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IPK37_06345 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aus03400
]
IPK37_06345 (ligD)
Enzymes [BR:
aus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IPK37_06345 (ligD)
DNA repair and recombination proteins [BR:
aus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IPK37_06345 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QQS01992
LinkDB
All DBs
Position
complement(1374045..1375055)
Genome browser
AA seq
336 aa
AA seq
DB search
MDRVDELPVIAPMLAVAGSAADLGAPERWAYEVKWDGYRAVAAVVGDQDGTPGAARFRSR
AGNDLTAAYPELRELPSLLAGHAAVLDGEVVALDADGRSNFGRLQNRGDPGAGIRAHYMV
FDVLHLDGVSLLAEPYPRRRELLQALLPEGGHVHVPTTFGSDLGVALDVSRSLRLEGIIA
KRLDSPYLPGRRARSWLKIKHVRTQEVVVVGWTAGTGRRAGTLGALLLGLPVAGAGPDGP
PGAPRQWRYVGKVGTGFTDRALEEIRAELAPLERATPVVPDVPRVDARGARWVEPVRVGE
VTYGEWTETGRLRHPAWRGWRPDKTPYDVRRELSAS
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggaccgtgtcgatgagctgcccgtgatcgcgccgatgctggccgtggccgggtccgcg
gcggatctcggggcgccggagcgatgggcgtacgaggtgaagtgggacggctaccgggcc
gtcgcggcggtcgtgggcgatcaggacggtacgccgggggcggcgcggtttcgcagccga
gccgggaacgatctgacggcggcgtaccccgaactccgcgaactgccgagcctcctcgcg
gggcacgcggcggtcctcgacggcgaagtcgtcgcgctcgacgccgacggccgctccaac
ttcggccggctgcagaaccgcggcgaccccggcgccggcatccgggcgcattacatggtc
ttcgacgtgctccacctcgacggggtgtcgctgctcgcggagccctacccgcgacgccgc
gaactcctgcaagcactgctccccgagggcggccacgtgcacgtgccgacgacgttcggc
agtgacctcggcgtggcgctcgacgtgagccggtcgctgcggctggaggggatcatcgcg
aaacgactcgacagtccctacctccccgggcgtcgcgcacgcagttggctgaagatcaag
cacgtccggacgcaggaggtggtggtcgtcggctggacggcggggaccgggcggcgggcg
ggcacgctcggggcgctgctgttggggctgccggttgccggagccgggccggatgggccc
cccggagcgccgcggcagtggcggtatgtcgggaaggtcggcaccgggttcacggaccgc
gcgctggaggagatccgcgccgagctcgcgccgctggagcgcgccacccccgtcgtaccg
gacgtcccccgcgtcgacgcgcgcggggcacgctgggtggagccggtgcgggtgggcgag
gtgacgtacggcgagtggaccgagaccggccggctgcggcaccccgcctggcgcgggtgg
cggccggacaagacgccgtacgacgtgcgccgggaactctccgcctcgtga
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