Aureimonas sp. SA4125: Sa4125_21110
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Entry
Sa4125_21110 CDS
T08429
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
auz
Aureimonas sp. SA4125
Pathway
auz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
auz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sa4125_21110 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
auz03400
]
Sa4125_21110 (mfd)
Enzymes [BR:
auz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sa4125_21110 (mfd)
DNA repair and recombination proteins [BR:
auz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sa4125_21110 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BDA84569
LinkDB
All DBs
Position
2271322..2274831
Genome browser
AA seq
1169 aa
AA seq
DB search
MKNQERLAKALGGGHGLSIGNVLDGYEPFLLAEIARQRSPKKPLIFVMRNGNRMAELEDA
LRFVAPELPIISLPAWDCLPYDRVGPSAEAAAMRLSAMTALGNLRAEPHRALVLTTANAL
LQKMPPAQVLADETISAKASGRIAMDHIVKVLQRGGFERVATVRERGEFAVRGGILDLFA
PSDEEPIRLDFFGDTLESIRTFDPATQRTTAQRKSFELAPVSEVSLKDETISRFRTNYLK
RFGAPLRNDGLYAAISEGRRFSGMEHWLPLFYEKLDSLFDYCAGFPIVLDHLVLEAVAER
RKTIQDHYDSRKRGAGEGTSEAVPYHPVDPDELYLSEDELIGGLASADPVRLSAFALPDK
GGRDTVNLEITRGRNFSAERAAGDVNVFERAVEHISTLRANGLKVILAAWSEGTRERLVQ
VVEEHGLGGLKAVESFKQALEAPKNVVATAVLGIEAGFVTDRIAVIAEQDILGDRLVRRA
RRKKRGADFIAEVSGLDENDIVVHVDHGIGRFVGLRSIQAAGAPHDCLEIRYAGDDRLFL
PVENIELLSRYGGEGSETILDKLGGGAWQARKAKLKKRLLDMAGGLIRIAAERQTRGAPK
LLPPEGLSGEFAARFPYEETEDQQSAIDAVADDLALGRPMDRLVCGDVGFGKTEVALRAA
FTAAMNGLQVAVVVPTTLLARQHFKTFSERFHGLPLNVAQASRLVTAKDLAATKKGLTDG
TIDIVVGTHALLGKGVTFKNIGLLIIDEEQHFGVRHKERLKELKSDVHVLTLSATPIPRT
LQLALTGVRELSLITTAPVDRMAVRTFITPFDPLVVRETLLRERYRGGQSFYVVPRLSDL
KGIHDFLSEHVPELKVAVAHGQMAAGELEDIMNAFYEGQYDVLLSTTIVESGLDIPSANT
MIVHRADMFGLAQLYQLRGRVGRSKLRAYALMTIPANKTLTAQADRRLKVLQSLDTLGAG
FQLASHDLDQRGAGNLLGDEQSGHVKEVGFELYQQMLEEAVAEMKGEPDVGDGKWSPMIS
LGSAVMIPETYVPDLQLRMSLYRRLADLSDIREIDAFGAEMIDRFGPLPDEVEHLLKVVY
IKALCRRANIEKLDAGPKGLVVQFRDKTFANPVALVRYISEQGAAAKIRPDQSIVLMRDW
TEPAKRLAGAATIATQLARFAEEAMKKAA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaccaggagcgcctggccaaggccctcggcggcggccacggcctgtcgatcggc
aatgtgctcgacggctacgagccattcctcctggccgaaatcgcccggcagcggtcgccg
aagaagccgttgatcttcgtcatgcgcaacggcaaccgcatggccgagctggaagacgcg
ttgcgcttcgtcgcgcccgagctgcccatcatctcgctgcccgcctgggactgcctgccc
tacgaccgcgtcggtccttccgcagaagccgccgccatgcgcctctcggcgatgacggcg
ctcggcaatctgcgcgccgagccgcaccgggcgctcgtcctcaccaccgccaacgcgctg
ctgcagaagatgccgccggcgcaggtgctggcggacgaaacgatctcggccaaggcgagc
ggccgcatcgccatggaccacatcgtcaaggtgctgcagcgcggcggcttcgagcgcgtg
gcgacggtgcgcgagcgtggcgagttcgcggtgcgcggcggcatcctcgacctgttcgcg
ccgagcgacgaggagccgatccggctcgacttcttcggcgacacactggaatcgatccgc
accttcgatcccgcgacccagcgcaccaccgcccagcgcaagagtttcgaactcgctccg
gtcagcgaagtgtcgctgaaggacgagacgatcagccgcttccgcacaaactacctcaag
cgcttcggtgcaccgctgaggaatgacggcctctacgccgcgatcagcgagggccggcgt
ttctccggcatggagcactggctgccgctcttctacgaaaagctcgattcgctcttcgac
tactgcgccggttttccgatcgttctcgaccacctcgtgctggaggccgtcgccgagcgc
cgcaagaccatccaggaccattatgacagccgcaagcgcggcgcgggcgaggggacgagc
gaggccgtcccctatcatccggtcgatccggacgaattgtatctttccgaggacgagctg
atcggcggcctcgccagcgccgatccggtgcgtctgtcggccttcgcgctgccggacaag
ggtgggcgcgacacggtgaacctcgagatcacccgcggccgcaatttctccgccgagcgc
gcggccggcgacgtcaacgttttcgagcgcgccgtcgagcacatctcgacgctccgtgcg
aacggcctgaaggtcatcctcgccgcctggtccgaaggcacccgcgaacgcctggtgcag
gtcgtcgaagagcacggcctcggcggcctgaaggcggtcgagagcttcaagcaggcgctg
gaggcgccgaagaacgtcgtcgcgacggccgtgctcggcatcgaggccggctttgtgacc
gaccgcatcgccgtgatcgccgaacaggacatcctcggcgaccgcctggtacgccgggcc
cgccgcaagaagcgcggcgccgatttcatcgccgaggtctccggcctcgacgagaacgac
atcgtcgtccatgtcgatcacggcatcggccgcttcgtcggcctgcgctcgatccaggcg
gccggggcgccgcacgactgtctggaaatccgctatgccggcgacgaccggctgttcctg
cccgtcgagaacatcgagcttctgtcgcgctatggcggcgagggctcggagaccatcctc
gacaagctcggcggcggcgcctggcaggcgcgcaaggcgaagctgaagaagcggctgctc
gacatggccggcggcctcatccgcatcgccgccgagcgccagacccgcggcgcgccgaag
cttctgccgcccgaaggcctttccggcgagttcgccgcgcgcttcccctatgaggagacc
gaggaccagcagagcgccatcgacgcggtcgccgacgacctcgcgctcggccggccgatg
gaccgcctcgtctgcggcgatgtcggcttcggcaagacggaagtggcgcttcgcgccgcc
ttcactgccgcgatgaacgggttgcaggtcgctgtcgtggtgccgaccacgctcctcgcc
cgccagcatttcaagacgttttccgagcgtttccacggcctgccgctgaacgtcgcgcag
gcttcgcgcctcgtcacggcgaaggatctggccgcgaccaagaagggcctcaccgacggc
acgatcgacatcgtcgtcggcacccatgcgctgctcggcaagggcgtcaccttcaagaac
atcggccttctcatcatcgacgaggagcagcatttcggcgtccgccacaaggagcggctg
aaggagctgaagagcgacgtccacgttctgaccctgtcggcaacgcccattccgcggacg
ctgcagctggcgctgaccggggtgcgcgaactgtcgctgatcaccacggcgccggtcgac
cgcatggcggtgcgcaccttcatcacgcccttcgatccgctggtggtgcgcgagacgctg
ttgcgcgagcgctatcgcggcggccagagcttctacgtcgtcccgcgtctttccgatctc
aagggcatccacgacttcctgtccgagcatgttccggaactgaaggtcgccgtcgcccac
ggccagatggctgcaggcgagctcgaagacatcatgaacgccttctacgagggccagtac
gacgtcctcctgtcgacgacgatcgtcgaatccggcctcgacatcccctcggccaatacg
atgatcgtccaccgcgccgacatgttcggcctcgcccagctctaccagctgcgcggccgc
gtcggccgttccaagctgcgcgcctatgcgctgatgacgatccccgccaacaagacgctg
accgcgcaggccgatcgccggctgaaggtgctgcagtcgctggatacgctcggcgccggc
ttccagctcgccagccacgatctcgaccagcgcggcgccggcaacctcctcggcgacgag
cagagcggccacgtcaaggaagtcggcttcgagctctaccagcagatgctggaggaggcc
gtggccgagatgaagggcgagccggatgtcggcgacggcaaatggtcgccgatgatcagc
cttggcagcgccgtgatgatcccggagacctacgtcccggacctgcagctgcgcatgagc
ctctaccgccgcctggccgatctctccgacatccgcgagatcgacgctttcggcgccgag
atgatcgaccgttttggcccgctgccggacgaggtcgagcacctcctgaaggtcgtctac
atcaaggctctctgccggcgcgccaacatcgagaagctcgatgccgggccgaagggcctc
gtcgtccagttccgcgacaagaccttcgccaacccggtcgcgctggtgcgctacatctcc
gagcagggcgcggcggcaaagatccggccggaccagtcgatcgttctcatgcgcgactgg
acggaaccggccaagcgcctcgccggcgccgcgaccatcgcgacgcagctggcgcgtttt
gccgaggaggcgatgaagaaggccgcctga
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