Trichormus variabilis: Ava_B0307
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Entry
Ava_B0307 CDS
T00277
Name
(GenBank) Type III restriction enzyme, res subunit
KO
K19789
DNA repair protein RadD
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ava03400
]
Ava_B0307
DNA repair and recombination proteins [BR:
ava03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
Ava_B0307
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Gene cluster
GFIT
Motif
Pfam:
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_34
P-loop_SecA
AAA_16
ERCC3_RAD25_C
nSTAND3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABA25017
CyanoBase:
Ava_B0307
UniProt:
Q3M1W9
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Position
A:complement(328199..329818)
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AA seq
539 aa
AA seq
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MQFDNLLSRADDGTLQVLLGNAAVRLIKLLDPSLVTPSRLREILMELHTPASLLLTKDSR
AMLLDLLRPEQAKILATIMQVPLTGDIFETLKKTSIRHGSNRERALFDFFELELPQPEDS
VQSSSLELAVSNYPLFAHQRIAARKVKNYFKQEPRRVLLHMPTGSGKTRTAMNIIADHLR
SVEPTIVVWLAYSEELCEQAATEFQKAWQCLGDRQVSLYRFWGEHEIDVDKLEDGIVVAG
LSKVYNRTKQSIQFINRLGKVSSLVIIDEAHQAIAETYKLVLDALVVPYENTALLGLTAT
PGRTWSDINVDTELSEFFAKNKVTLEVSGYSNPVDYLISEEYLAKPNFRSLFYKNGLKLT
QKDLERIQQELEIPQHILEQLADDEQRNLSIIIEVEELAKRHQRILIFGISIKHSKLLAT
VLRARGLQANVVTGDTPLLERTRLINSFKDDSDETKIICNYGVLTTGFDAPRTSAAVIAR
PTKSLVLYSQMVGRAIRGVKAGGNVTAEIVTVVDSALRGFGSLEEAFSNWEDVWHKEKI
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
ttgcaatttgataacttgctatcaagagcagacgatggaacactacaagttttactcgga
aatgctgctgtccggttaatcaagctattagatcctagtcttgtaacccctagccgtcta
cgagaaattttgatggaactacatactcctgctagtcttcttttgacaaaggatagccgg
gccatgcttttagatttgctacgtccagaacaggctaaaattctagcaacaattatgcaa
gttccgcttacaggagatatttttgagactttaaaaaaaacatcaatacgtcatggttct
aacagagagcgtgccttatttgacttctttgaattggaattgccacaaccagaggattca
gttcaatcgtcttcattagaactagcagtatctaattatcccttatttgcccatcaacgt
attgcagcgcgaaaagttaagaattattttaagcaggagccacgtcgggttttactgcat
atgcctacaggatcgggcaagactcgaaccgctatgaatattattgcagatcatttacgc
tcagttgaaccgactatagttgtttggttagcgtatagtgaagaactgtgtgaacaagcc
gcaaccgaatttcagaaagcgtggcaatgtttaggagatcgccaagtaagtctctatcgt
ttttggggtgagcatgaaatagatgtagataagttagaagatggcatagtagtagcaggg
ctttcaaaagtttataatcgtacaaagcaaagcatacaatttatcaatagacttggtaaa
gtttcatcgttagtaattatcgatgaagcacatcaagctattgcagagacttataagtta
gttcttgatgcacttgtagtaccatatgaaaacaccgcccttctaggtttaactgctaca
cctggtagaacttggtctgatatcaatgtagatactgaattatcagaattttttgcaaaa
aacaaagtaactcttgaagtttcggggtatagcaatcccgtcgattacctaatatcagag
gaatatttagcaaagcctaatttccgctctttattttataaaaacggcttgaagttaaca
cagaaagatttggagcgaatacaacaagaattagaaatacctcaacatattttagaacag
ttagctgatgatgaacaaagaaatctcagcatcattatagaagtagaagaattagccaaa
cgtcatcaaagaattttgatttttggaatttcaataaaacattcaaaattacttgccact
gtactccgagctaggggtttacaggcaaatgtagttactggtgatactccattattggag
cgaacgcgcttaattaatagtttcaaagatgattctgatgaaaccaaaattatatgtaat
tacggtgttttaactacgggttttgatgcccctcgaacaagtgcagcagtcattgcgcgt
cccacaaaatctcttgtactctacagccaaatggttggacgggctattcgaggtgtaaaa
gcaggtggtaatgtaactgctgagattgttaccgttgttgacagcgctttacggggattt
ggttctcttgaagaagcttttagtaattgggaagatgtttggcataaagaaaaaatttag
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