Actinomyces viscosus: NCTC10951_00563
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Entry
NCTC10951_00563 CDS
T06789
Symbol
hrdB
Name
(GenBank) RNA polymerase principal sigma factor hrdB
KO
K03086
RNA polymerase primary sigma factor
Organism
avc
Actinomyces viscosus
Brite
KEGG Orthology (KO) [BR:
avc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NCTC10951_00563 (hrdB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avc03021
]
NCTC10951_00563 (hrdB)
Transcription machinery [BR:
avc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NCTC10951_00563 (hrdB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GlutR_dimer
Motif
Other DBs
NCBI-ProteinID:
VEI14693
UniProt:
A0A3S4VIC9
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All DBs
Position
1:611453..613120
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AA seq
555 aa
AA seq
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MASSTVTRSRAELTDDVDETTLDDEDFDLDDEGDDDTDDSDYDDEDFDDSDEDDSDDEDE
DSDEDEDQEDDDSETQVVQDDDGPAPELRDYYLDVSLEENGDGSKRSPFNNPASLKGVRL
APGATLFVRSRTIVENLEIAGHGTLEEPITLAPYGHGPVPRFVIGDSAPMVARDYLAQNG
YIFRGWVIKGIKMQPSIAALTGELERMRREEAEKAASKKSGKRGKSQDKDGSFTVSDSDE
GDEPAQRVVTAGATADPVKDYLKQIGKVALLNAEQEVELAKRIEAGLYAEHRLAEEGNDL
PAKLRRELHWVAQDGQRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVE
KFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGRE
PTPEELAVELDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSF
TLLQEQLHAVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSK
LRHPSRSQVLRDYLD
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
gtggcttcttccacagtgacgcgctcccgcgccgagctcactgacgacgtcgacgagacc
acgctcgacgatgaggacttcgacctcgacgacgaaggagacgacgacaccgacgactcc
gactacgacgatgaggacttcgacgactccgacgaggacgactctgacgatgaggatgag
gactccgacgaggatgaggaccaggaggacgacgactcggagacgcaggtcgtccaggac
gatgacggccccgcccccgagctgcgcgactactacctggacgtgagcctggaggagaac
ggcgacggctccaagcgcagccccttcaacaaccccgcatcgctcaagggtgtccggctg
gcccccggggcgacgctcttcgtgcgctcgcgcacgatcgtggagaacctggagatcgcc
gggcacggcaccctggaggagcccatcaccctggcgccctacggccacggcccggtgccc
cggttcgtcatcggtgactccgccccgatggtggcgcgcgactacctggcccagaacggt
tacatcttccgcggctgggtcatcaagggcatcaagatgcagccctcgatcgcggccctg
accggtgagctcgagcgcatgcgccgggaggaggcggagaaggccgcctccaagaagtcc
ggcaagcgcggcaagtcccaggacaaggacggctccttcacggtctccgactccgacgag
ggcgatgagcccgcccagcgggtcgtcaccgccggcgccaccgcggacccggtcaaggac
tacctcaagcagatcggtaaggtcgcgctgctgaacgccgagcaggaggtcgagctcgcc
aagcgcatcgaggccggcctctacgccgagcaccgcctggccgaggagggcaacgacctg
ccggccaagctgcgccgcgagctgcactgggtggcccaggacggtcagcgcgccaagaac
cacctcctggaggccaacctgcgactggtggtctccctggccaagcgctacacgggccgc
ggcatgctcttcctggaccttatccaggagggcaacctgggcctcatccgcgccgtcgag
aagttcgactacaccaagggcttcaagttctccacctacgccacctggtggatccgtcag
gccatcacccgcgccatggcggaccaggcccgcaccatccgcatcccggtgcacatggtc
gaggtcatcaacaagctcgcccgcgtgcagcgccagatgctccaggacctgggccgtgag
cccaccccggaggagctggccgtcgagctggacatgaccccggagaaggtggtcgaggtc
cagaagtacgggcgtgagccgatctccctgcacacgcccctgggtgaggacggcgactcc
gagttcggtgacctcattgaggactccgaggccgtggtgcccgccgacgcggtgagcttc
accctccttcaggagcagctgcacgccgtgctggacaccctctcggagcgtgaggccggt
gtcgtctccatgcgcttcggcctgaccgacggccagcccaagaccctcgacgagatcggc
aaggtctacggggtcactcgcgagcgcatccgccagatcgagtccaagaccatgtccaag
ctgcgccacccctcgcgcagccaggtcctgcgcgactacctggactga
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