Agrobacterium vitis VAR03-1: RvVAR031_08700
Help
Entry
RvVAR031_08700 CDS
T08810
Symbol
rfbC-2
Name
(GenBank) dTDP-4-dehydrorhamnose 3,5-epimerase
KO
K01790
dTDP-4-dehydrorhamnose 3,5-epimerase [EC:
5.1.3.13
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf00521
Streptomycin biosynthesis
avf00523
Polyketide sugar unit biosynthesis
avf00541
O-Antigen nucleotide sugar biosynthesis
avf01100
Metabolic pathways
avf01110
Biosynthesis of secondary metabolites
avf01250
Biosynthesis of nucleotide sugars
Module
avf_M00793
dTDP-L-rhamnose biosynthesis
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 O-Antigen nucleotide sugar biosynthesis
RvVAR031_08700 (rfbC-2)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
RvVAR031_08700 (rfbC-2)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
RvVAR031_08700 (rfbC-2)
Enzymes [BR:
avf01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.13 dTDP-4-dehydrorhamnose 3,5-epimerase
RvVAR031_08700 (rfbC-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dTDP_sugar_isom
Motif
Other DBs
NCBI-ProteinID:
BCH53260
UniProt:
A0A6S6MLB4
LinkDB
All DBs
Position
1:973549..974112
Genome browser
AA seq
187 aa
AA seq
DB search
MSQRFQPEQTAIPGLTLLTRSRFGDERGFLSRLFCGEELAAHGWPGPVLQVNETGTAQKG
TVRGMHFQHAPFAEWKLVTCVEGTILDVAVDLRQGSPSFLQHVCVELSGDNCRSLLIPPG
FAHGFQALSDTVRMIYTHSAPYRAEAEGGLHPQDPRIGITWPLPVERLSARDQSHPLIQA
DFEGLIA
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
atgagccaacgcttccagcccgaacaaaccgcgatccccggactgacgctgctgacccgc
agccggtttggcgacgagcgtggttttctcagccggttattttgcggcgaagagcttgca
gcccatggctggccagggccggtcttgcaggtcaacgaaaccggtacggcacaaaaaggc
accgtgcgtggcatgcattttcaacacgcgccttttgccgaatggaaactggtgacttgt
gttgaagggacaatcctcgacgtggccgtggatctgcgccagggctcgccgagcttcctc
cagcacgtctgtgtcgaactgtcgggcgacaattgccgctcgctgctgatcccgccgggc
tttgcccatgggtttcaggcgctgagcgacacggtgcggatgatttatacccattctgca
ccttaccgggcggaggccgagggcgggcttcacccgcaggatccacggatcggcatcacc
tggcctttgccggttgagcggctgtctgcccgagaccagagccatccgctgatccaagcc
gactttgaaggactgattgcatga
DBGET
integrated database retrieval system
