Agrobacterium vitis VAR03-1: RvVAR031_11590
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Entry
RvVAR031_11590 CDS
T08810
Symbol
smc
Name
(GenBank) chromosome partition protein Smc
KO
K03529
chromosome segregation protein
Organism
avf
Agrobacterium vitis VAR03-1
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
avf03036
]
RvVAR031_11590 (smc)
Chromosome and associated proteins [BR:
avf03036
]
Prokaryotic type
Chromosome partitioning proteins
Condensin-like complex
RvVAR031_11590 (smc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_21
AAA_15
SMC_hinge
AAA_29
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
BCH53549
UniProt:
A0A6S6MSU2
LinkDB
All DBs
Position
1:1280455..1283916
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AA seq
1153 aa
AA seq
DB search
MKFTKLRVVGFKSFVEPTEFIIERGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG
MDDVIFSGSGNRPARNSAEVGLYLDNSDRTAPAAFNDSDEIQVSRRIERENGSVYRINGK
EARAKDVQLLFADASTGARSPSMVGQGRIGELIQAKPQARRQLLEEAAGISGLHSRRHEA
ELRLRAAETNLERLEDIVAQLESQIESLKRQARQANRFKMLSADIRARDAMLLHIRWTEA
RQAEAEAEASLNETTSLVAERAQAQMEAAKAQAIASLQLPALRDEEVKAAASLQRLQIAR
SQLEEDAGRLFKRRDELTRRLLQLEEDIAREQRLVDDNAEILERLAAEEAELEEVLTESG
QEADDLRIALEEASASLADSESRFAAITAERAEAAAGRNQLERALRDLADKRLRLERQAD
EAGRELDAVAEKLAALPDPEEKREAVEAGEYAVEEAESTVGQAEEALSAARRAEALARGP
VEAARSALAALETEAKTIAKMLASSASAGEFSPVADALTVERGFETALGAALGDDLESPL
DARAPAHWAMPGPDGDDPALPAGIVALATHVSAPQALLRRLKQIGITDAATAQRLQPDLK
PGQRLVTREGAVYRWDGHVTGSEAPSAAALRLAQKNRLAVLEEETDEARIGLEEAEERLK
AGRDAVTSSEARLADVRERQRLILRQLSEARDALTVAERASGDLLRRRAVVEEAVNGLRA
QIEEAESLAEEAQIALADQADLTSLDDQLRQLQMEVATGRGLVAEARARNEGFARENDQR
QRRIMAIRQERQSWSQRAASASQHIATLREREAEARDEMAELEAAPDEFDEKRRLLMGEL
DKAEAARRAAADRLVEAEARQRQADQVAASALSALAEARERRGRAEERLLSGRERRKDAE
ARIQEALNVGPHEAFRLTGLKPDDAIPDLREVERDLDRLKIERERLGAVNLRADEEQKEL
SDKLAALIKERDDVIDAIRKLRGAIQSLNREGRERLVAAFDVVNAQFQRLFTHLFNGGTA
ELQLIESDDPLDAGLEILARPPGKKPQTMTLLSGGEQALTAMALIFAVFLTNPAPICVLD
EVDAPLDDHNVERYCNLMDEMAASTQTRFVIITHNPITMARMNRLFGVTMAEQGVSQLVS
VDLQTAEQLREAV
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaagttcaccaagcttcgggtcgtcggcttcaagtcctttgtcgaaccgacggaattc
atcatcgagcgcggactgaccggtgttgtcgggccgaacggctgcggcaagtccaatctg
gttgaggcgctgcgctgggtgatgggggaaaactcctataagaacatgcgcgcctccggc
atggatgacgtgatcttttccggctcaggcaacaggcctgcccgcaattctgcggaggtc
gggctttatctcgacaattccgaccgcaccgcgcccgccgccttcaacgatagcgacgaa
attcaggtgagccgccgtatcgagcgggaaaacggctcggtctatcgcatcaatggcaag
gaagcccgcgccaaggatgtgcaattgctgtttgccgatgcctcgaccggggcgcgctcg
ccgtcgatggttggccaggggcggattggcgagttgattcaggccaagccgcaggcacgc
aggcaattgctggaagaggccgccggtatttccggcctgcattcgcgccgtcatgaggcg
gaactgcggttgcgggcggccgaaaccaatctggagcggctggaggatattgtcgcccag
ctggaaagccagatcgagagcctgaaacgacaggcccgtcaggccaatcgcttcaagatg
ctgtccgccgatatccgcgcccgcgatgccatgctgttgcacatccgctggaccgaagcg
cggcaggccgaggccgaggcggaagcgtcgctcaacgagacgacctcgctggtggccgaa
cgggcgcaggcgcagatggaagcggccaaggcccaagccattgccagcctgcaattgcct
gcgttgcgtgacgaagaggtcaaggccgcagccagcctgcaacgcttgcagattgcccgc
agccagctggaggaagatgccggacggctgttcaaacgccgtgacgaactgactcggcgg
ctgttgcagctggaagaggatattgcccgcgagcagcggctggtcgatgacaatgccgaa
attcttgagcggctggctgctgaggaagccgaactggaagaggtactgacggaaagcggt
caggaggccgacgatctgcgcatcgccttggaggaagcatcggctagccttgccgacagc
gaatcccgctttgccgcaatcaccgccgaacgcgccgaggcggcagccgggcgcaaccag
ttggaacgggcgctgcgcgaccttgccgacaagcgattgcggctggagcgtcaggccgac
gaggctggccgcgaactggatgccgtggccgaaaagctcgcggccctgccggacccggag
gaaaagcgcgaggcggtggaagccggtgaatacgccgtggaagaggctgaaagcacggtt
gggcaagcggaagaggccttaagtgccgcccgccgggcagaggcactggcccgtggtcca
gtggaagcggcacgctctgccttggcggcgctggaaaccgaggcgaaaaccattgccaaa
atgctggcctcttcagccagcgccggagaattttcgccggtggccgatgcactaaccgtc
gagcgcggctttgagaccgcgcttggtgccgcgcttggcgacgatctggaaagcccgctt
gatgcgcgtgcgcccgcccattgggccatgcccgggccggatggcgatgatccggctttg
cccgctggcatcgtcgctctcgccacgcatgtgtctgcaccgcaagctttgttgcgtagg
ctgaaacagatcggcatcaccgatgcggccaccgcgcaacgcttgcaaccggacctgaaa
cccggccagcggctggtgacgcgggagggggccgtctatcgttgggatggccatgtcaca
ggctctgaagcgccgagtgcggcggcccttcgccttgcccagaagaatcgtctggcagtg
ctggaggaagaaacggacgaggcccgcatcgggctcgaagaggctgaagaacgattgaag
gcagggcgcgacgcggtgacgtcgagcgaagctcgtcttgcggacgtgcgtgagcgccaa
aggttgatcctgcgccaactctctgaagcccgcgatgcgttgaccgttgccgagcgcgcc
agcggtgatctgctgcgccgtcgcgccgtggtggaagaggcggtaaacgggcttcgcgcc
cagatcgaagaggccgaaagcctggccgaagaagcgcagattgcccttgccgatcaggcc
gacctgacgtcgctggacgaccaattgcggcaattgcagatggaggtcgctaccggtcgc
ggactggtggccgaagcccgtgcccgcaatgaagggtttgcccgcgaaaacgaccagcga
cagcgccggatcatggccatccgtcaggagcggcaaagctggtcgcagcgtgccgcaagt
gccagccagcatatcgccacgctgagggagcgcgaggcggaagcccgcgacgaaatggcc
gagctggaagcggcccccgacgaattcgacgaaaaacgccgtctgctgatgggcgagctg
gacaaggccgaagccgcaaggcgtgctgccgccgaccggctggtggaggccgaggcccgc
cagcgtcaggccgatcaggtcgctgctagcgccttgtcggcgctggccgaagcgcgcgag
cgccggggccgggcggaagaacggttgctgtctggacgcgagcggcgcaaggatgccgag
gcccgtattcaggaagcgctcaatgtcggcccgcacgaagccttccgcctgaccgggttg
aaacccgatgacgcgatccctgacctgcgcgaggtcgagcgtgatctggaccgcctgaaa
atcgagcgcgaacggctgggcgccgtcaacctgcgcgctgatgaagagcagaaggaattg
tccgataagctcgcagccctgatcaaggagcgcgacgatgtgatcgacgcgatccgcaaa
ctgcggggcgcgatccagagcctcaatcgcgagggccgggagcggctggtggcggctttc
gacgtggtcaatgcgcagttccagcggctgttcacccacttgttcaacggtggcacagcg
gaattgcagctgatcgaaagcgacgatccgctggatgctggcctggaaatcctcgcccgc
ccgcccggcaagaagccgcagactatgacgctgctgtcgggcggtgagcaggccctgacc
gccatggcgctgattttcgccgtcttcctcaccaatccggcgccgatctgcgtgctggac
gaggtcgatgcgccgctcgacgaccacaatgtcgagcgctattgcaacctgatggacgaa
atggcggcctcgacccagacccgtttcgtgatcatcacccacaacccgatcaccatggcc
cgcatgaaccggctgttcggcgtcaccatggccgaacagggcgtctcgcaactggtgtcc
gtggatttgcagacggcggagcaattgcgcgaggctgtgtga
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