Agrobacterium vitis VAR03-1: RvVAR031_22230
Help
Entry
RvVAR031_22230 CDS
T08810
Symbol
cobD
Name
(GenBank) cobalamin biosynthesis protein CobD
KO
K02227
adenosylcobinamide-phosphate synthase [EC:
6.3.1.10
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf00860
Porphyrin metabolism
avf01100
Metabolic pathways
avf01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00860 Porphyrin metabolism
RvVAR031_22230 (cobD)
Enzymes [BR:
avf01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.1 Acid-D-ammonia (or amine) ligases (amide synthases)
6.3.1.10 adenosylcobinamide-phosphate synthase
RvVAR031_22230 (cobD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CobD_Cbib
GPI2
Motif
Other DBs
NCBI-ProteinID:
BCH54613
LinkDB
All DBs
Position
1:complement(2425892..2426863)
Genome browser
AA seq
323 aa
AA seq
DB search
MMETHLLILALALVLDRVVGDPPWLWSRLPHPVVVFGTCISAFDGLLNRPVLADPLRKAG
GVLTIVLLLIVSLGVGYGLHQLFAALGFLGMLLEIIVTAVFLAQKSLLDHVNAVADGLRH
EGLAGGRRAVSMIVGRDPDVLDEAGVARAALESLSENFADGVVAPALWYGLLGLPGLLAY
KMLNTADSMIGHKSERYLQFGWASARLDDLANWPAARLAGLLTVCSVWLDNGAPAARRCF
AVMMADHGLHRSPNSGWPEAAAAGALDVALAGPRIYAGETVREPMMNAAGRRAIGGADIR
LGLRLIDGAWRTGLGLLMVLTVL
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgatggaaacgcatctgcttatcttagctctggcgctggtgcttgaccgcgtggttggc
gatccgccttggttatggtcgcgcctgccgcacccggtcgtggtgtttggcacatgtatt
tcggccttcgacggtctgctgaaccggcctgttctggctgatccgctgcgcaaggcgggc
ggggtgctgacgattgtgcttctgctgatcgtaagccttggcgtcggatatgggctgcat
cagctgtttgcagcgctcggatttctcgggatgctgctggaaattatcgtcacggcggtg
tttttggcgcagaaaagtctgctggatcatgtgaacgccgtcgctgatggcttgcgccat
gaagggcttgccggtggtcgccgggccgtgtcgatgattgtcgggcgcgatcccgatgtg
ctcgatgaggccggtgtggcacgcgccgcgctggaaagcctgtcggaaaactttgccgat
ggggtggtggctcctgccctctggtatggcctgctcggcctgcccggtctgcttgcctat
aaaatgctgaacactgccgattcgatgatcggccataaatccgaacgctacttgcagttc
ggctgggcctcggcgcggttggatgatctggccaattggccagctgcccggctggcggga
ttgttgactgtgtgttccgtctggttggacaatggcgctccagcagccaggcgatgcttt
gcggtcatgatggctgaccatggcctgcatcgttcgccaaattccggctggccggaggcg
gctgcggcaggtgcgctggatgtggcgctggcggggccgcgaatttatgcaggagaaaca
gtgcgggagccgatgatgaacgcggctggtcggcgcgccatcggcggtgccgacatcagg
cttggcctgcggttgatcgatggcgcctggcgtacaggcctgggtctcctgatggttctg
acagtcctttga
DBGET
integrated database retrieval system
