Agrobacterium vitis VAR03-1: RvVAR031_39280
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Entry
RvVAR031_39280 CDS
T08810
Name
(GenBank) hypothetical protein
Organism
avf
Agrobacterium vitis VAR03-1
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
He_PIG
fn3
Big_9
Cadherin_5
DUF4959
Motif
Other DBs
NCBI-ProteinID:
BCH56318
UniProt:
A0A6S6MXX7
LinkDB
All DBs
Position
2:713399..719038
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AA seq
1879 aa
AA seq
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MQCGKSFRVSPALAKTKKAAWTWLKRSANAVFRAFIGVLTILITGLSFATAANAALSASC
SQVNSDFSSPRYLTNTDNFSPDYQSLTAGEYISWSFSTTGTAAGGTSSAIVIYSDNYNNL
LVNESNLGGNINKSGNFTATASVDNLQMILDVTQDSSASPSDYNTLTFSAACYASAPTSP
GAPTIGTATPGNGQATVSFTAPASNGGAAITSYTVTASPGGATASGSASPITVTGLTNGT
AYTFTVTATNSVGTGAASAATSAVTPTAPSFTFSPVSGALTAATVGTAYSETITASGGTS
PYTYAVTSGTLPSGLSLNTTTGEISGTPSSVENASFTISATDANSATSSASYSLGVAAGL
PGAPTIGTATAGNSQATVSFTAPASNGGAAITSYTVTASPGGATASGSASPITVSGLTNG
TAYTFTVTATNSVGTGAASAATTSVTPTAPTFTFSPASGALTAATVGAAYSETVTASGGT
SPYTYAVTSGTLPVGMSLNTSTGAISGTPTTAANTSFTITATDANSATGSASYSLAVAAD
LPGAPTIGTASAGDTQATVSFAAPASDGGASITSYTVTASPGGATASGSASPITVTGLTN
GTAYTFTVTATNSAGTGAASVASNSVTPSAVLQAPVANAVSETVAANSSANVITLNMTGG
AASSVAVASAASHGTATASGTSITYTPTAGYSGSDSFTYTATNATGTSSPATVTITVTAP
AFTLSPASGTLTAATVGTAYSETITASGGTSPYTYAVTSGTLPAGMSLNTSTGAISGTPT
TAANTSFTITATDANSATGSASYSLAVAADLPGAPTIGTASAGDTQATVSFAAPASDGGA
SITSYTVTASPGGATASGSASPITVTGLTNGTAYTFTVTATNSAGTGAASVASNSVTPSA
VLQAPVANAVSETVAANSSANVITLNMTGGAASSVAVASAASHGTATASGTSITYTPTAG
YSGSDSFTYTATNATGTSSPATVTITVTAPTLVLSPSAGTLATGTVGAAYSQTVAVSGGA
EPYDYEFLSGSLPAGLSITSSGGAPARVLSGTPSAAGTSNFTVKVTDAYGATVTASYSIT
INAAAPIANALTATVTANSTDNVLAPSITGGAATAVAIASSPSHGAATVSGTNFIYTPTA
GYSGSDSFTYTATNATGTSSPATVTITVTAPTFTLSPTSGALTAATIGTAYTETVTASGG
TSPYSYAVTSGTLPAGMSLNTSTGAISGTPTTAANTSFTITATDANSATGSVSYSLTVTE
PSVTLSLSPSSGALTTATVGTAYSQSVTTTSGTAPYTYAGTGLPDGLVLDTSTGTISGTP
TTAGSYAIAVTVTDSASPANHGSGNYTLTVNAAASIAFSPAGGALKEAMAGEAYSQQISA
TGGTGTLIYSLSSGSLPKGMVLNISTGALNGPLDAGTEGDYSFAIQARDSNGTTGTASYT
VKVATRAVTVADHVVEVPAGATPNNVYLNKDATGGPFIEADIVSVEPPEAGTATLIQGEL
AAVSSASPVGWYLKFTPNPAYSGQARIAYRLGSLLGNSNTGTVIYNINYNAEQVATDIDN
LVHSFVQTRQNMISSAIKVPGLMERGRMARATTPVTTRMSPSTQGMTFGFSTSLAQMESA
RDSADGIAGGYSSPFNIWIDGAVLAHNDKDTNGSKWGSFAMINMGADYLLTDKALLGLSF
HYDRMTDPTDEDAMLTGNGWLAGPYTSFEVTKGVFWDASLLYGGSSNTIDTEFWDGNFDT
QRWMLDTSIKGKWSLDQATVVTPKLRAVYFSETVDDYSVKNSSGDSIDLDGFTSEQFRVS
LGAEIARSFTLASGSTLTPKLGLTTGFSGLDGSGLFGSVTAGASMQTTEAWAIEGSLLFN
IEGEGEKSVGAKVGLSRKF
NT seq
5640 nt
NT seq
+upstream
nt +downstream
nt
atgcaatgcggcaaatcgtttcgtgtctcgcctgctctggcaaagacaaaaaaggcggca
tggacttggctgaagcggtcagcgaacgccgtcttccgggcttttatcggtgtcctcacc
atcctgattaccggtttgagctttgcgacagcggccaatgccgcactttcagcgtcatgc
agccaagtcaattcagacttcagctcgccacgctatctcaccaacaccgacaacttttcc
cctgattatcagagcttgaccgctggagaatatatttcctggagcttttccaccactgga
acagcagctggcggcacctcatcggcaattgtcatatacagcgacaattataataatctt
ctcgtcaatgagagtaatcttggcggaaatatcaataaatcaggcaattttacagccacg
gcttccgttgacaatctacagatgatccttgatgtcacacaggattcatcggctagcccc
tctgattacaacaccctcacattcagtgctgcctgttatgctagcgctcccacgtctcct
ggtgcgccgacaatcggaacggcgacgcctggcaacggccaggccacggtgtccttcacc
gctccggccagcaatggcggcgcagcgatcaccagctataccgtgacggcaagcccgggt
ggggcgacggcaagcggatcggcaagtccgatcaccgtgaccggcctgaccaatggcacc
gcctatacgtttacggtcaccgcgactaacagtgtcggaacgggtgcggcttcggcagca
acgagcgcggttaccccaacagcgccaagctttaccttctcgcccgtctcaggtgcgttg
acagcagcgaccgtgggaacggcctatagcgagacaattacggcttcgggcggaacatcc
ccctatacctatgcggtcacatcaggcacgcttcccagcggattgagcctcaacacgacg
actggcgagatctcgggtacgccgtcaagcgtggaaaacgccagcttcaccatctcagcc
acggatgccaatagcgcgacgagctcggcaagttattcccttggcgtggccgcaggcctt
cctggtgcgccgacaattggaacggctacagctggaaacagccaggccaccgtttccttc
acggctcccgccagcaatggcggcgcggcgatcaccagctataccgtaacggcaagtccg
ggtggtgcgacggcaagcggatcggcaagcccgatcaccgtgagcggcctgaccaatggc
acggcttatacattcacggttaccgccaccaacagtgttggaacgggtgcggcttcggcg
gcaaccacctctgtcaccccgacagcgccaacctttaccttctcccccgcctccggcgcg
ttgactgcggcaactgttggagctgcctatagcgagacggtcacggcttcgggcggaacg
tcgccctatacctatgcggttacatcagggacacttcctgttggcatgagcctcaacaca
tcgaccggggcgatttcaggcacaccaacgaccgctgccaataccagcttcaccatcacc
gccaccgatgccaatagcgctacggggtcggcgagctattccctcgccgtggcagcagac
cttcccggcgcgccgacgattgggacggcatccgccggtgatacccaagcgaccgtttcg
tttgccgccccggccagcgatggtggcgcgtcgattacaagctataccgtgacggcaagc
ccgggtggggcgacggcaagcggttcggcaagcccgatcaccgtgaccggcctgaccaat
ggcacggcctatacgtttaccgtgaccgcgaccaacagtgccggaaccggggcggcttca
gtcgcgtcgaactcggtcaccccgtctgccgttctccaggccccggttgccaacgccgtc
tccgaaacagttgcggccaattcgtcggccaacgtgatcacactgaacatgaccggcggt
gcggcctcgtccgttgcggtcgcgtcagcggcatcgcatggaacggccacagcctccggc
acgtcgatcacctatacgcccacagctggttattccggctccgacagttttacctacact
gccaccaatgcaaccggaacatcttctccagctacggtgactataacggtaacggcccca
gccttcaccctgtcaccagcctctggcacgttgactgcggcaaccgtggggacggcctat
agcgagacaattacggcttcgggcggaacatccccctatacctatgcggttacatcaggg
acacttcctgctggcatgagcctcaacacatcgaccggggcaatttccggcacaccaacg
accgctgccaataccagcttcaccatcaccgccaccgatgccaatagcgctacggggtcg
gcgagctattcgcttgccgtggcagcagaccttcccggcgcgccgacgattgggacggca
tccgccggtgatacccaagcgaccgtttcgtttgccgccccggccagcgatggtggcgcg
tcgattacaagctataccgtgacggcaagcccgggtggggcgacggcaagcggttcggca
agcccgatcaccgtgaccggcctgaccaatggcacggcctatacgtttaccgtgaccgcg
accaacagtgccggaaccggggcggcttcagtcgcgtcgaactcggtcaccccgtctgcc
gttctccaggccccggttgccaacgccgtctccgaaacagttgcggccaattcgtcggcc
aacgtgatcacactgaacatgaccggcggtgcggcctcgtccgttgcggtcgcgtcagcg
gcatcgcatgggacggccacagcctccggcacgtcgatcacctatacgcccacagctggc
tactccggctccgacagttttacctacactgccaccaatgccaccggaacatcctctcca
gctacggtgactataacggtgacggccccgaccttggtcctctcgccttcggcgggcacc
cttgcaacaggcacggttggtgcggcctatagccaaacggttgcggtatccggtggcgca
gagccgtatgattacgaattcctgtcaggatctttgccagccggcctgtccataacgtca
agcggtggcgcccctgccagggttctctccggcacgccgtcggctgccggaacgagtaac
ttcacggttaaagttaccgatgcatatggtgcaacggtcacggcatcttattccatcacc
atcaatgcagcagcgccgatcgccaacgcgctgacggcaactgtgacggcaaactctaca
gataacgttctggcaccttccatcaccggtggtgctgcgacggcggttgccattgcctcc
tcgccgagccatggggcagcaacggtatccggcaccaactttatctatacgccgactgct
ggttattccggctccgacagttttacctacactgccaccaatgctaccggaacatcctcg
ccagctacggttaccataacggtgacggctccgaccttcaccctgtcaccaacttccggc
gcgttgactgcggcaactattggaacggcctatactgagacggtcacggcttcgggtggc
acgtcaccctatagctatgcggtcacatcagggacacttcctgctggcatgagcctcaac
acatcgaccggagcgatttccggtacaccaacgaccgctgccaatacgagcttcaccatt
acggccaccgatgccaacagcgccacaggatcggtaagctactcgcttaccgtcacggag
ccgtcggtaacgctgagcctctctccgtcttcaggggctctcaccacagcaacggtgggc
actgcctatagccagtccgtcacgacaaccagtggtaccgctccttatacctacgctgga
accggcctgccggatggtctcgtccttgatacgagtaccggaaccatcagcggaacaccg
acgacggctggaagctatgctatcgctgtgacggtcaccgatagcgcgtcacctgccaat
catggctcgggcaactatacgctgacggtgaacgcagcggcgtccatcgccttctcgcca
gctggcggcgcgctaaaggaagccatggcgggcgaggcctatagccagcagatctcagca
acaggtggcacgggaacgctgatctacagcctttcctctggaagcctgccgaaaggcatg
gtgctgaatatctcgaccggtgctctgaatggaccgctcgatgcgggtacggaaggcgat
tattcctttgccatccaggctcgtgacagcaatggtacgaccggcacggcaagctatacc
gtcaaagtggccacgcgcgcggtgactgtggcggatcatgtggtcgaggttcccgcaggt
gccacgccgaataatgtctatctcaacaaagacgctaccggaggtccgtttatcgaggca
gatattgtctccgtcgagccacccgaggcagggacggcaacccttattcaaggggagctt
gcagccgtctcgtcagcttcacctgtcggctggtatttgaaattcactccgaatccggcc
tattcaggacaggcccgtatcgcctatcgccttggcagtttgcttggaaattccaacacg
ggcactgtcatctacaacatcaactataatgccgagcaagtcgcgacggatatcgacaac
ctcgtacacagctttgtccagacccgtcaaaacatgatctcatccgcgatcaaggtgccg
ggtctgatggaacgaggccggatggccagggcgacgacccctgtgacaaccaggatgtct
ccgtctacgcaaggaatgacgttcggtttttctaccagtcttgcacagatggaatcggcc
cgtgacagtgccgacggcattgctggcggctattcttcgccgttcaatatctggattgat
ggtgccgttctggctcataacgacaaggacaccaatggcagcaagtggggcagcttcgcc
atgatcaacatgggggccgactatctgctaaccgacaaggcgctgctgggtctttcgttt
cactatgaccggatgacagacccgacggatgaggacgccatgctgaccggcaatggctgg
ctggctggcccctatacctctttcgaagtgaccaaaggcgtgttctgggatgcaagcctg
ctgtatggcgggtcctcaaacaccatcgatactgagttctgggatggcaatttcgatacc
cagcgctggatgttggatacgtccatcaagggaaaatggtctttggaccaagcgaccgtg
gtaacaccgaaactaagagcggtttatttttccgaaaccgtcgacgattattccgtaaaa
aacagctcgggcgactctatcgatctcgatgggtttacctcggagcagttcagggtgagc
ctcggcgctgaaattgcccgttcctttacgcttgcaagcggctcgaccctgacgccaaaa
cttggtctcaccaccggcttttctggcctcgacggatcgggtctgttcgggtcggtgacg
gctggcgcgtccatgcaaaccactgaggcttgggcgattgaaggcagccttctgtttaac
atcgaaggcgaaggtgagaaatcggtcggcgcgaaggttggattgtcgcggaagttttga
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