Agrobacterium vitis VAR03-1: RvVAR031_pl06110
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Entry
RvVAR031_pl06110 CDS
T08810
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
avf
Agrobacterium vitis VAR03-1
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RvVAR031_pl06110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avf03400
]
RvVAR031_pl06110
Enzymes [BR:
avf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RvVAR031_pl06110
DNA repair and recombination proteins [BR:
avf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RvVAR031_pl06110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
BCH57280
UniProt:
A0A6S6MZZ1
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All DBs
Position
pRvVAR031b:58385..59314
Genome browser
AA seq
309 aa
AA seq
DB search
MPGRIEPCLALLKAKPPSGPDWIYEIKWDGYRVAVHIEPNAVRIITRGGHDWTDRFPAIA
ATARKLGVGTAILDGEAVVLDAEGRSDFGALQRSLGGRGGRQASDDAILYAFDLLYFDGH
DLTKMELSGRRHLLEDLIGESEGAIRVSQEVEADGVTLLATACEHGLEGIIAKHRDSTYR
SGRLGDWLKIKCIQSESFMIVGYEPSTAARGGIGSLLLAAYQGAAFVYVGSVGTGFKEKD
AMELRRMLDTLKTKRAPVAVDKKGVVFVQPTLIAEIEYRAWTDDGKLRHASYKGLRELQD
NAAIYKLPE
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgcccggtcgcatcgaaccgtgcctcgcgctgttgaaggcaaagccgccgtccggaccg
gactggatctacgagatcaaatgggacggctatcgtgtggcggtccatatcgagccgaac
gcggtgcggatcatcacccgtggcggtcatgactggaccgacaggtttccggcaatcgca
gccactgcccgcaagctcggcgtcgggaccgccattcttgatggggaagccgtcgtcctc
gatgcagaggggcgctcggacttcggggcgctgcagcgttcacttggcgggcgcgggggc
agacaagcgtcagacgatgccatcctctacgctttcgacctgttgtatttcgacgggcat
gacctgacgaagatggagttgtccggacgtcgtcacctgctggaagatctgatcggcgaa
agcgaaggagcgatccgcgtgtcgcaggaggtcgaagcggatggcgtgacacttctggcg
actgcctgcgaacacggtctggaaggcatcatcgccaagcaccgcgacagcacctaccgc
tcgggtcggctcggcgactggctgaagatcaaatgcatccagagcgaaagctttatgatt
gtcggatacgagccgtccaccgcggcgcgcggtgggatcggcagcctgttgctggcggcc
taccagggtgccgcgttcgtctatgtcggttcggtcgggactggcttcaaagagaaagac
gcgatggaactgcgtcgaatgctggacacgctgaagaccaagcgtgcgccggttgccgtc
gataaaaagggggtcgtcttcgttcaaccgacattgattgccgagatcgaatatcgcgcc
tggaccgacgatggcaaattgcggcatgcctcgtacaagggcctgcgggagctgcaggac
aacgcggcgatctacaaactgccggaatag
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