Allorhizobium ampelinum: Avi_1755
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Entry
Avi_1755 CDS
T00851
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
avi
Allorhizobium ampelinum
Pathway
avi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Avi_1755 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avi03019
]
Avi_1755 (rnr)
03016 Transfer RNA biogenesis [BR:
avi03016
]
Avi_1755 (rnr)
Enzymes [BR:
avi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Avi_1755 (rnr)
Messenger RNA biogenesis [BR:
avi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Avi_1755 (rnr)
Transfer RNA biogenesis [BR:
avi03016
]
Prokaryotic type
tRNA degradation factors
Avi_1755 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
HTH_12
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
ACM36259
UniProt:
B9JVH9
LinkDB
All DBs
Position
1:complement(1465913..1468291)
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AA seq
792 aa
AA seq
DB search
MTLSKSPRPDTRSLTNRTRKAELAAKKAADKNETVIIHGAVPPREILMQFITDNPDRASK
REIAKAFGLKGEARIELKEALRALEEDGLVNKNRKSLSRPGALPPVTVLDITTRDKDGDL
IGRPAEWPDELGAAPAVSIRQSSADRAKGKTPVGGLGDRVLAKIFPSKDHIGPAYTARII
KVIDKRRGALLGVYREMAGDTGGRLMPIERRGEEMVIEAADVGDARDGDLVEVEVGRLSS
RLGLARAKVLSVIGSVASEKAISMIAIHAHGIPHIFPQSVLDEADAAKPASMAHREDWRS
LPLVTIDPHDAKDHDDAVHAEPDPSPDNPGGVIVTVAIADVSYYIRSKSALDREALKRGN
SVYFPDRVVPMLPERISNDLCSLREGVDRPALAVRMVFSHEGRKASHTFHRIMMKSAAKL
SYQQAQAAIDGNPDDKAGPLLEPILKPLWAAYAILKRGRDRRQPLELDMPERKIILKADG
TVDRVFVPERLDAHKLIEEMMIQANVAAAETLEKKKQPLVYRIHDTPTLAKQEVLREFLA
TIGFSLAKGGNLRSNSFNGILAKAQDTPHQTIVNEMVLRSQSQAVYSPENIGHFGLNLLK
YAHFTSPIRRYADLIVHRALVGTLGLGEGGITSDEEAALADVAAEISTFERRAMAAERDT
INRLIAHHLATRIGDEFDGQVSGVTKSGLFISLPQYGADGFIPVSTLGRDYFIYDEAHQA
LTGEKTGLGYQLGDSVSVKLVEAVPLAGALRFEILSEGKKMPTGIRSFHKATRRGRPGPG
KTPGTRPPRGRR
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
ctgaccttgagcaaatccccgcgacccgacacccgcagcctcaccaacagaacgcggaag
gcggagcttgcggcgaaaaaggcagcggacaagaatgaaacggtgatcattcacggggcg
gtgccgccccgtgaaatcctgatgcagttcatcaccgacaaccccgaccgggcatccaag
cgcgaaatcgccaaggcttttggcctgaagggcgaagcccgtattgaattgaaggaagcc
ctgcgggctttggaagaagacgggctggtcaacaagaaccgcaagtcgctgagccgacct
ggggcattgccgcccgtgaccgttctcgacatcaccacccgtgacaaggatggcgacctg
atcgggcgtcccgccgaatggccggatgaactgggcgctgcccctgccgtttccatccgc
cagtccagcgcggaccgcgccaagggcaagacgccggttggcggactaggcgaccgggtt
ttggcaaagattttcccctccaaggaccatatcggtcccgcctataccgcccggatcatc
aaagtgatcgacaagcggcgcggcgcgcttttgggcgtctaccgtgaaatggccggtgat
accggcggcaggctgatgccgatcgagcggcgcggcgaggaaatggtcatcgaggccgcc
gatgtcggcgacgcccgcgacggcgatctggtcgaggtggaagtcgggcggctctccagc
cgtctgggtcttgcccgcgccaaggttctgtcggtgattggctcggtggcatcagaaaaa
gccatctcgatgatcgccatccatgcccatggcattccacatatcttcccgcaatcggtg
ctagacgaggccgatgccgccaaaccggccagcatggcgcatcgggaggactggcgcagc
ttgccgctggtcacgatcgacccgcatgacgccaaggaccatgacgacgctgttcatgcc
gagccggacccctcgcccgataatccgggcggcgtgatcgtcaccgtggcgattgccgac
gtctcctattatatccgcagtaagtcggcgctggaccgcgaggcgctgaagcgcggcaat
tcggtctatttccccgaccgggtcgtgccgatgctgccggagcggatttccaacgatctc
tgctcgctgcgcgagggcgttgaccggccggcgctggccgtgcgcatggtgttttcccat
gaaggccgtaaggccagccatacctttcatcgcatcatgatgaagagtgcggccaaactg
tcctaccaacaggcacaggccgctattgacggcaacccggatgacaaggctgggccgctg
ctggagccgatcctgaagccgctttgggccgcctatgcgatcctgaagcgtggccgcgac
cgccgtcagccactggaactggacatgccggagcgcaaaatcatccttaaagccgatggc
acagtggatcgggtctttgtaccagaacggctggacgcccataagctgatcgaggaaatg
atgatccaggccaatgtggccgccgccgagacgctggagaagaaaaaacagccgctggtc
taccgcatccacgatacgccaacattggccaagcaggaagtgctgcgcgagttcctggcc
accatcggcttttcactggccaagggcggcaatctgcgctccaattcgttcaatggtatc
ctcgccaaggcgcaggacacgccgcatcagaccatcgtcaacgaaatggtgctgcgctcg
cagagtcaggcggtctatagccccgagaatatcggccatttcggcttgaaccttttgaaa
tacgcgcatttcacctcccccatccgccgctacgccgacctgatcgtgcatcgggcgctg
gttggcacgctagggcttggcgaaggcggcattacatccgatgaagaagcggcgctggcc
gatgtcgccgccgaaatttccaccttcgagcgccgcgccatggcagccgagcgcgacacg
atcaaccggctgatcgctcaccatctggcaacacggatcggcgacgaattcgacgggcag
gtctcaggcgtcaccaaatccggcctgttcatctccctgccgcaatatggcgctgatggc
ttcattccggtctcaacgcttggccgcgactatttcatctacgatgaggcacatcaggca
ctgaccggcgaaaagaccgggcttggctatcaattgggggatagcgtcagcgtcaagctg
gtggaagccgtgccgctggccggtgccttgcggtttgaaatcctcagcgaaggcaagaaa
atgccgaccggcatccgttccttccacaaggcgacgcggcgcggacggcctggtcccggc
aagacaccgggaacaagaccaccgcgtggaaggcgttga
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