Allorhizobium ampelinum: Avi_5260
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Entry
Avi_5260 CDS
T00851
Name
(GenBank) conserved hypothetical protein
KO
K20276
large repetitive protein
Organism
avi
Allorhizobium ampelinum
Pathway
avi02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
avi00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Avi_5260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
He_PIG
fn3
Big_9
Cadherin_5
Cadherin
Motif
Other DBs
NCBI-ProteinID:
ACM38414
UniProt:
B9K0L6
LinkDB
All DBs
Position
2:254829..260468
Genome browser
AA seq
1879 aa
AA seq
DB search
MQFGKSFRVAHVLADPKTLAWTRLKRSAGAAFRAFIGVLTILITGLSFATTANAALSASC
SQVNSDFSSPRYLTNTDNFSPDYQNLTAGEYISWSFSTTGTAAGGTSSAIVIYSDNYNNL
LVNESNLGGNINKSGNFTASASVDNLQMILDVTQDNSASPSNYNTLTFSAACYASAPTSP
GAPTIGTATPGNSQATVSFTAPASDGGAAITSYTVTASPGGATATGSASPITVTGLTNGT
AYTFTVTATNSVGTGTASAATSAVTPTVPTFTFSPASGALTAATVGTAYSQTVTASGGTS
PYTYAVSSGTLPAGMSLNTSTGEISGTPSSVESASFTISATDANSATSSASYSLAVAAGL
PGAPTIGSATAGNGQATVSFTAPVSNGGAAITSYTVTASPGGATATGSASPINVTGLANG
TAYTFTVTATNSVGTGAASAATSSVTPTAPTFTFSPASGALTAATVGTAYSETVTVSGGT
SPYTYAVTSGTLPAGMSLNTSTGAISGTPTTAGSASFTITATDANSATGSANYSLAVAAD
VPGAPTIGTASAGDSQATVSFTAPASDGGASITSYTVTASPGGATGTGSASPITVTGLTN
GTAYTFTVTATNSAGTGTASTASNSVTPGASLQAPIANAVSDTVSANSSNNPITLNMTGG
AASSVAIATAASHGTASASGTSITYTPTAGYSGSDSFTYTATNATGTSSPATVTITVTAP
AFTLSPASGTLTAATVGTAYSETVTVSGGTSPYTYAVTSGTLPAGMSLNTTTGAISGTPT
TAANTSFTITATDANSATGSASYSLAVAADVPGAPTIGTASAGDSQATVSFTAPASDGGA
SITSYTVTASPGGATGTGSASPITVTGLTNGTAYTFTVTATNSAGTGTVSVASNSVTPSA
VLQAPVVNAVSETVAANSSANVITLNMTGGTASSVAVASVASHGTATASGTSITYTPTTG
YSGSDSFTYTATNATGTSSPATVTITVTAPTLVLSPSAGTLAAGTVGAAYSQTVAVSGGA
EPYDYEFLSGSLPAGLSITSSGGASARILSGTPSAAGTSNFTVKVTDAYGATVTASYSIT
INAAAPIANALTATVTANSSDNVLAPSITGGAATAVTIASSPSHGAATVSGTNFIYTPTA
GYSGADSFTYTATNSTGTSSPATVTITVTAPAFTLSPASGTLTAATVGTAYSETVTASGG
TSPYTYAVTSGTLPAGMSLSTSTGAISGTPTTAANTSFTITATDANGASGSASYSLAVTE
PSVTLTLSPSSGALTTATVGTAYSQSVTTTSGTAPYTYAGTGLPDGLVLDTSTGTISGTP
TTAGSYAIAVTVTDSASPANHGSGNYTLTVNAAASIAFSPAGGALKEAMAGEAYSQQISA
TGGTGSLIYSLSSGSLPKGMVLNISTGALNGPLDAGTEGDYSFAIQARDSNGTTGTASYT
VKVTTRAVTVADHVVDVPAGATPNNVYLNKDATGGPFTEADIVSVEPPEAGTATLIQGEL
AAVSSASPVGWYLKFTPNPAYSGQARIAYRLGSSLGNSNTGTVIYNINYNAEQVATDIDN
LVHSFVQTRQNMISSAIKVPGLMERGRMARATTPVTTRMSPSTQGMTFGFSTSLAQMESA
RDSADGVAGGYSSPFNIWIDGAVLAHNDKDTNGSKWGSFAMINMGADYLLTDKALLGLSF
HYDRMTDPTDEDAMLTGNGWLAGPYTSFEVTKGVFWDASLLYGGSSNTIDTQLWDGNFDT
QRWMLDTSIKGKWSLDEATVVTPKLRAVYFSETVDDYAVKNSSGDTIDLDGFTSEQFRVS
LGAEIARSFTLASGSTMTPKLGITTGFSGLDGSGLFGSVTAGASLQTTEAWAIEGSLLFN
IEGEGEKSVGAKVGLSRKF
NT seq
5640 nt
NT seq
+upstream
nt +downstream
nt
atgcaattcggtaaatcgtttcgtgtcgcgcatgttctggcagatccaaagacgttggca
tggacccggctcaagcgatcggctggtgccgcctttcgggctttcattggcgtcctcacc
atcctgattaccggcttgagttttgcgacaacagccaatgccgcactttcagcgtcatgc
agccaagtcaattcagacttcagttcgccacgctatctcaccaacaccgacaacttttcc
cctgattatcaaaatttgaccgcaggcgagtatatctcctggagtttttcgaccactgga
acagcagctggcggcacctcatcagcaattgtgatatacagcgacaactataataatctt
ctagttaatgagagtaatcttggtggaaatattaataaatctggcaattttacagccagc
gcttcggtagataatctacagatgatccttgatgtcactcaagataactcggctagccct
tccaactacaacacgctcacattcagtgccgcgtgttacgctagtgcgccgacgtctccc
ggtgccccgacaatcggaaccgccacacctggcaacagccaggccacggtgtccttcact
gcccctgccagcgatggcggtgcggcgatcaccagctataccgtgacggcaagtccgggt
ggcgcgacggcaaccggctcggcaagcccgatcaccgtgacaggcctgaccaatggtacg
gcctatacattcacagtcaccgccaccaacagtgttggaaccgggacggcttcggcagca
acgagcgcggtcacgccgacagtgccaacctttaccttttcccctgcctcaggcgcgttg
actgcggcaactgttggaacagcctatagccagacagtcactgcttcgggcggaacgtcg
ccctatacctatgctgtttcatcaggaacacttcctgctggcatgagcctaaacacatcg
accggagagatctccggcacgccgtcaagcgtggaaagcgctagcttcaccatctcagcc
acggatgccaatagcgcgacgagctcggcaagttattccctcgccgtggccgcaggcctt
cctggtgcgccgacgattggatcggctacagctggaaacggccaggccacggtgtccttc
accgctccggtcagcaatggcggtgcggcgatcaccagctataccgtgacggcaagtccg
ggtggcgcgacggcaaccggctcggcaagcccgatcaatgtgacgggtctcgccaatggt
acagcctataccttcacggtcaccgcgaccaacagtgttggaaccggtgcggcttcggca
gcaacgagctcggtcaccccgacagcgccaacctttaccttctcccccgcctcaggcgcg
ttgacagcagcaactgttggtacggcctatagcgagacggtcacggtttcgggcggaacg
tcgccctatacctatgcggttacatcagggacacttcctgctggaatgagcctcaacaca
tcgaccggggcaatttccggcacgccgacgaccgccggaagcgctagctttaccatcacc
gctaccgatgccaatagcgcgacgggatcggcgaactattcgcttgccgtggcagcagac
gttccaggcgcgccgacgattgggacggcatccgccggtgatagccaggcgaccgtttcg
tttactgccccggccagcgatggtggcgcgtccattacaagctataccgtgacggcaagc
ccgggtggagcgacggggaccggatcggcaagcccgatcaccgtgactggcctcaccaat
ggcacggcctatacgtttaccgtgaccgcgaccaacagtgccggaaccgggacggcttca
acggcatcgaattcggtcacgccgggagcatcactccaggctcccattgctaacgcggtc
agcgacacggtcagtgcgaactcgtcgaataacccgatcacactgaacatgaccggcggt
gcggcctcgtccgttgccattgccacggccgcgtcgcatggtacggcctcggcctccggc
acgtcgatcacctatacaccgacggctggctattccggttccgacagttttacctacact
gccaccaatgccaccggaacatcctctccggccacggtgaccataacggtaacggccccg
gcgttcaccctgtcacccgcctccggcactttgacagcagcaactgttggtacggcctat
agcgagacggtcacggtttcgggcggaacgtcgccctatacctatgcggttacatcaggg
acacttcctgctggaatgagcctcaacacaacgaccggggcgatttccggcacaccaacg
accgctgccaataccagcttcaccattaccgctaccgatgccaatagcgcgacgggatcg
gcgagctattcgcttgccgtggcagcagacgttcccggcgcgccgacaattgggacggcg
tctgccggtgatagccaggcgaccgtttcgtttaccgccccggccagcgatggtggcgcg
tccattacaagctataccgtgacggcaagcccgggtggagcgacgggaaccggatcggca
agcccgatcaccgtgactggcctcaccaatggcacggcctatacgtttaccgtcaccgcg
accaatagtgccggaaccgggacggtttcggtcgcttcgaactcggtcaccccgtctgcc
gttctccaggccccggttgtcaacgccgtctccgaaacagttgcggccaattcgtcggcc
aacgtgatcactctcaacatgaccggcggcacggcttcgtccgttgcggtcgcttcagtg
gcatcgcatggaacggccacagcctccggcacgtcgatcacctacacgcccacaactggc
tattccggttccgacagttttacctatactgccaccaatgccaccggaacatcctcgcca
gctacggtgaccatcacggtgacggcgccaaccttggtcctctcgccctcggctggtacc
cttgcagcaggcacggtgggtgctgcctacagccaaaccgtcgcagtatccggtggcgca
gagccgtatgactacgaattcctgtcgggatctttgccagctggcctgtccataacgtca
agcggtggcgcctctgccaggattctttccggcacgccgtcggctgccggaacgagtaac
ttcacggttaaagttaccgatgcatatggtgcaacggtcacggcatcttattccatcacc
atcaatgcagcagcgccgatcgccaacgcgctgacggcaacggtgacggcaaactcttcg
gataacgttctggccccctccattaccggcggtgctgcaacggcggtcaccattgcctcc
tcgccaagccatggggcagcaacggtatccggcaccaattttatctatacgccgacggct
ggctattccggcgccgacagttttacctacaccgccaccaattccacgggaacatcctca
ccagccacggtgaccataacggtgacggccccggccttcaccctgtcaccagcctccggc
actttgacagcggcaactgttggaactgcctatagcgagacggtcaccgcttcgggcgga
acatcgccctatacctatgctgttacctcagggacgcttcctgctggcatgagcctcagc
acatcgaccggggcgatttccggcacaccaacgacagctgccaacaccagcttcaccatc
accgccaccgatgccaacggcgcctcgggatcggcaagctattcgcttgccgtcacggag
ccatcggtaacgcttactctttctccgtcgtcaggggctctcaccacagcaacggtgggc
actgcctatagccagtccgtgacgacaacgagtggtaccgctccttatacctacgctgga
accggcctgccggatggccttgtcctcgatacgagtaccggaaccatcagcggaacgccg
acgacggctggaagctatgctatcgcggtgacggtcaccgatagtgcgtcacccgccaat
catggctcgggcaactatacgctgacggtgaacgccgccgcgtccatcgcgttctcgcca
gctggtggagcgctaaaagaagctatggcgggcgaggcttatagccagcagatatctgca
acagggggaacaggatcgctgatctacagcctttcctctggaagcctgccgaaaggcatg
gtgctgaatatctcgaccggtgcgctcaatggaccgctcgatgcgggtacggaaggcgat
tattcctttgccatccaggcccgtgacagcaatggtacgactggcactgcaagctatacc
gtcaaagtgaccacgcgcgcggtgaccgtggcggatcatgtggtcgacgttcccgcaggc
gccacgccgaataatgtctatctcaacaaagacgctaccggaggtccgtttaccgaggcc
gatattgtctccgtcgagccacccgaggcagggacggcaacccttattcaaggtgagctt
gcagccgtctcgtcagcttcacctgtcggctggtatttgaaattcactccgaatccggcc
tattcgggacaggcccgtatcgcctatcgccttggcagttcgcttggaaattccaacacg
ggcaccgtcatctacaacatcaactataatgcagagcaagtcgcgacggatatcgacaac
ctcgtacacagctttgttcagacccgtcaaaacatgatctcctccgcgatcaaagtgccc
ggtctgatggaacgaggccggatggccagggcgacgaccccggtgacaaccaggatgtct
ccgtctacgcaaggaatgacgttcggtttttccaccagtcttgcacagatggaatcggcc
cgtgacagtgccgacggcgttgctggcggctattcctcgccattcaacatctggattgat
ggtgccgttctggctcataacgacaaggacaccaatggcagcaagtggggcagctttgcc
atgatcaacatgggggccgactatctgctaaccgacaaggcgctgctgggtctttcgttt
cactacgaccggatgacagacccgacggatgaggatgcgatgctgaccggcaatggctgg
ctggctggcccctatacctctttcgaagtcaccaaaggcgtgttctgggatgcgagcctg
ctgtatggcgggtcctcaaacaccatcgatacccagctctgggacggcaatttcgatacc
cagcgctggatgttggatacgtccatcaagggaaaatggtctttggacgaagcgaccgtg
gtgacgccgaagctaagagcggtttatttttccgaaaccgtcgatgattacgccgtgaaa
aacagctcgggcgacacgatcgatctcgacgggtttacctcggagcagttcagggtgagc
ctcggcgctgaaattgcccgttcctttacacttgcaagcggctcaaccatgacgccaaaa
cttggtatcaccaccggcttttctggcctcgacgggtccggtttgttcggatcggtcacg
gctggcgcgtcactgcaaaccactgaggcttgggcgattgaaggcagccttctattcaac
atcgaaggcgagggcgaaaaatcggtcggtgcgaaggttggattgtcgcggaagttttga
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