Apaloderma vittatum (bar-tailed trogon): 104271273
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Entry
104271273 CDS
T08559
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03013
Nucleocytoplasmic transport
avit03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104271273 (UPF1)
03015 mRNA surveillance pathway
104271273 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avit03019
]
104271273 (UPF1)
Enzymes [BR:
avit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104271273 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104271273 (UPF1)
Messenger RNA biogenesis [BR:
avit03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104271273 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104271273 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104271273
NCBI-ProteinID:
XP_009864195
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
VNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVY
CNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGF
IPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQ
ITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADY
DKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKG
IGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETS
VSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPV
SFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT
CVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFD
FQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPY
EGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDP
RRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKP
RKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHV
TAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGIPGTSQSNLP
NSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
gttaatggacctgatggcattctgcagaacggagctgtggatgataatgtggctaaaacc
agccagctgctggcagagttgaattttgaagaagacgaagaagacacctattacacaaag
gatcttccagtgcacgcttgcagttactgtggtatccatgaccctgcttgtgtggtttac
tgtaacacaagcaagaagtggttctgtaatggacgtggaaatacatctggcagccacatt
gttaatcaccttgtgagagcgaagtgcaaagaggtgactctccataaagatgggccccta
ggagagactgtcttggaatgctataactgtggatgtcgtaacgtgtttctccttggcttt
attccagctaaggcagactccgtggttgttttgctgtgcaggcagccatgtgccagtcag
agcagtttaaaggatattaattgggacagttcacagtggcagcctctcatccaagatcgc
tgcttcctttcgtggctggtaaagattccatctgaacaggaacagttgagagcacgtcag
attacagctcagcagattaacaaactggaagaactttggaaggaaaatccatctgcaacc
ctcgaggacttggaaaagcctggtgttgatgaagaaccacagcatgtcctgcttagatat
gaagatgcttatcagtaccaaaatatatttggtcctctggtcaagcttgaggcagactat
gacaagaaactgaaggagtctcagacccaagataacatcacagtcagatgggacctgggc
ttgaacaagaaaagaattgcttatttcactttgccaaagactgattcagatatgcgtctt
atgcaaggagatgagatctgcttgaggtacaaaggagacctggcccctttgtggaaagga
attggtcatgttatcaaagttccagataattatggtgatgagatagccattgagctgagg
agcagcgttggagcgccagtggaagtcactcataacttccaagtggattttgtgtggaag
tcgacttcatttgacagaatgcagagtgctttaaaaacattcgctgtggatgagacctcg
gtgtctgggtacatctatcacaaactcttaggtcatgaggtagaagatgtaattattaaa
tgccagttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtt
tatgctgtgaagactgtcctgcagcgtcctctgagccttattcagggtccccctggtacc
ggaaaaacagtgacatcagccaccatcgtgtatcatctggcgagacagggcaacgggcct
gtgttagtctgtgctccgagtaatatagctgtggatcagctgactgagaagatccatcaa
actggcctgaaggtcgttcgcctgtgtgctaaaagtcgtgaggccattgactctcctgta
tccttcttggccttgcacaaccagatcaggaacatggatagcatgccagagcttcagaaa
ctgcagcagctgaaagatgaaactggagaactgtcatctgccgatgagaaacgttaccgt
gcgctgaaacgaacggcagagcgcgagttacttatgaacgcggatgtgatctgctgcacg
tgtgtgggagccggcgatccgagacttgcgaagatgcagttccgctccattctcattgat
gaaagcacgcaggctactgaaccggagtgcatggtgccagttgtcctgggagcaaaacag
cttattcttgtgggcgaccactgccagcttggtcctgtcgtgatgtgtaagaaagctgcc
aaggctggcctgtcgcagtctctcttcgagaggctcgtggtgctggggattcgtccgatt
cgcctgcaagtgcagtaccgcatgcaccccgccctgagtgcttttccatccaatatcttc
tacgaggggtcactccagaatggtgttactgcagccgaccgtgtgaaaaaaggttttgat
ttccagtggccacagccagataagcccatgtttttctatgttacacaaggacaggaagaa
attgccagctcgggcacctcttacttaaacaggacggaagctgccaatgtggagaagata
actaccaagctcttgaaagctggtgccaaaccagatcagattggcattattactccttac
gaaggtcagcgatcctatctggtgcagtacatgcagttcagcggttccttgcatacgaag
ctctatcaggaagtggaaatcgcaagcgtggatgccttccagggccgagagaaggacttt
attatcctttcttgtgtgagggccaacgaacaccagggaatagggttcctgaatgaccca
aggcgtcttaatgtagctcttacaagagcaaggtatggagtcattattgttgggaaccca
aaagcgctgtctaaacaaccactttggaatcatctgctgaattactacaaggagcaaaag
gttctggtggagggaccactgaataacctccgggaaagcctcatgcagttcagcaagccc
cggaagcttgtcaataccatcaacccgggtgcccgtttcatgaccactgccatgtatgat
gcacgtgaggccattattccaggatctgtctatgatcggagcagtcaagggcgcccgtcc
aacatgtacttccaaacccacgaccagatcgggatgatcagtgctggccccagccacgtc
accgctatgaacattcccatcccgttcaacctcgtgatgccaccgatgccacccccggga
tactttggccaggccaacggaccagctgcaggacgtggggcgccgaaaggaaagaccggt
cgtggcgggcgccagaaaaatcgttttgggattcctggaactagtcagtcaaaccttccc
aatagtcaagcgagccaagatgtggtgtcccagccgttctcgcagggtcccctgactcag
gggtatatctccatgagtcagccctcacagatgagtcagcctgggctctcccaacccgaa
ttatcacaggacagttaccttggtgatgagtttaaatctcagattgacgtggcgctgtca
caggactctacttaccagggtgaacgtgcatatcaacatggtggagtgacgggactgtca
cagtattag
DBGET
integrated database retrieval system
