Apaloderma vittatum (bar-tailed trogon): 104280381
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Entry
104280381 CDS
T08559
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03022
Basal transcription factors
avit03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104280381
09124 Replication and repair
03420 Nucleotide excision repair
104280381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avit03021
]
104280381
03400 DNA repair and recombination proteins [BR:
avit03400
]
104280381
Transcription machinery [BR:
avit03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
104280381
DNA repair and recombination proteins [BR:
avit03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
104280381
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
VWA_3
Motif
Other DBs
NCBI-GeneID:
104280381
NCBI-ProteinID:
XP_009876316
LinkDB
All DBs
Position
Unknown
AA seq
395 aa
AA seq
DB search
MDEEPDRTKRWEGGYERTWEILKEDDSGSLKATIEDILFKAKRKRLYEHHGQVRLGMMRH
LYVIVDGSRTMEDQDLKPNRLTCTLKLMEYFVEEYFDQNPISQIGLIVTKSKRADKMTEL
SGNSKKHITALKKAVDMSCSGEPSLYNSLDLAMQTLKHMPGHTSREVLVIFSSLTTCDPA
NIYNLIKCLKAAKIRVSVIGLSAEVRVCSLLAQETGGTYHVILDESHYKELLMHHVSPPP
ASSSSECSLIRMGFPQHMMASMSDQDAKPSFSMAQLENSSEPGLTLGGYFCPQCRAKYCE
LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEVPLEEYQGERCCQGCQGEMKDQNVFVC
KVCQNAFCVECDLFIHDSLHCCPGCVHELPAPPSV
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggagcccgaccggaccaagcgctgggaaggcggctacgagaggacatgggaa
atcctcaaggaggatgactccgggtcgctgaaagccaccatcgaggacattcttttcaag
gcaaagaggaaaagactctatgagcaccatggacaagtgcgactgggaatgatgcgtcac
ctgtacgtgattgttgatggatcaagaacgatggaggaccaggatttaaaaccgaacaga
ctgacctgcacgttgaagttaatggaatattttgttgaagagtactttgaccaaaatcct
attagtcagattggcttaattgtaaccaagagtaaaagagctgataaaatgacagaactt
tcaggtaactcgaagaagcacataactgctctgaagaaagcagtggatatgagctgcagt
ggagagccatctctgtataattccctagatttggccatgcagactttaaagcacatgccg
gggcacacgagcagagaggttttggtcatcttcagcagcctgacaacatgtgacccagcc
aacatctacaacctgataaagtgcttaaaagcagctaagatcagagtatctgtcatcggc
ctcagtgctgaagttcgtgtgtgttcactgcttgcccaagaaaccggtggaacgtaccat
gttattttagatgaaagccattataaggagcttctgatgcatcatgttagtcctccacct
gccagttccagttctgagtgctctcttattcgcatgggttttcctcagcatatgatggct
tctatgtctgatcaagatgcaaagccatcctttagcatggcgcaattagaaaacagcagt
gagccgggtcttacactgggtgggtatttctgtccccagtgcagagcgaaatactgtgag
cttcctgtggaatgcaaaatctgtggtcttactttagtgtcggcacctcacctagctcgg
tcttaccatcacttgtttcctttggacgcctttcaggaagttcctctggaagaatatcag
ggggaacggtgttgtcaaggctgccagggagaaatgaaagatcaaaatgttttcgtgtgt
aaggtgtgtcagaatgcattttgcgtggaatgcgatttgtttattcacgattccctgcac
tgctgtcctggttgtgttcacgagctccctgctcctccatctgtgtga
DBGET
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