KEGG   PATHWAY: avl00020
Entry
avl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Azotobacter vinelandii CA
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
avl00020  Citrate cycle (TCA cycle)
avl00020

Module
avl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:avl00020]
avl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:avl00020]
avl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:avl00020]
avl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:avl00020]
avl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:avl00020]
Other DBs
GO: 0006099
Organism
Azotobacter vinelandii CA [GN:avl]
Gene
AvCA_29820  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AvCA_20040  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
AvCA_23470  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AvCA_28310  icd; isocitrate dehydrogenase, NADP-dependent, Icd [KO:K00031] [EC:1.1.1.42]
AvCA_29770  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AvCA_29760  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AvCA_29750  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AvCA_29730  sucC; Succinyl-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
AvCA_29740  Succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
AvCA_16440  acetyl-CoA hydrolase/transferase family [KO:K18118] [EC:2.8.3.18]
AvCA_18740  Acetyl-CoA hydrolase/transferase [KO:K18118] [EC:2.8.3.18]
AvCA_16700  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
AvCA_29790  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AvCA_29780  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AvCA_29810  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
AvCA_29800  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
AvCA_38440  fumB; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
AvCA_34880  fumC2; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AvCA_27180  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AvCA_04080  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AvCA_41330  mqo2; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AvCA_02050  pycA; pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
AvCA_02060  pycB; pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
AvCA_05450  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AvCA_44900  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
AvCA_46170  pdhA; pyruvate dehydrogenase E1 alpha subunit [KO:K00161] [EC:1.2.4.1]
AvCA_46160  pdhB; pyruvate dehydrogenase E1 beta subunit [KO:K00162] [EC:1.2.4.1]
AvCA_41750  acoC; branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
AvCA_44910  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
avl00010  Glycolysis / Gluconeogenesis
avl00053  Ascorbate and aldarate metabolism
avl00061  Fatty acid biosynthesis
avl00071  Fatty acid degradation
avl00190  Oxidative phosphorylation
avl00220  Arginine biosynthesis
avl00250  Alanine, aspartate and glutamate metabolism
avl00280  Valine, leucine and isoleucine degradation
avl00350  Tyrosine metabolism
avl00470  D-Amino acid metabolism
avl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system