Agrobacterium vaccinii: HRR99_11090
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Entry
HRR99_11090 CDS
T08171
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
avq
Agrobacterium vaccinii
Pathway
avq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HRR99_11090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avq03019
]
HRR99_11090
Enzymes [BR:
avq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HRR99_11090
Messenger RNA biogenesis [BR:
avq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HRR99_11090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
AAA_19
Helicase_RecD
Flavi_DEAD
CMS1
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UHS62025
LinkDB
All DBs
Position
circular:complement(2240339..2241901)
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AA seq
520 aa
AA seq
DB search
MTSFSELGLSEKIVAGVTQLGYTTPTPIQEKAIPLLLEGRDMIGLAQTGTGKTAAFGLPI
IEMLLKQPDRPANRTTRTLILAPTRELVNQIGESLRGFVRKTHLKINQVVGGASINKQQL
QLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMVPAG
RQTLLFSATMPKAIADLAGSYLTNPVTVQVTPPGKAADKVEQYVHFVAGKNDKTELLKKS
LTDNPDGRAIVFLRTKHGAEKLSKHLEHIGFKVQSIHGNKSQGQRERALKGFKDGEVQVL
VATDVAARGIDIPAVTHVFNYDLPEVADAYVHRIGRTARAGRDGIAIAFCAPDETRLLHD
IEKLMKIEIPVLSGERPEGLASPSRGNNNRGGNGGNRANANGPRRQGGERGERAHGDRPA
RGPRDGGHREGGPRDGGRRNGDFRGQRAGEFAPVERDNDLEVTSDFKRPKTEGAAAAAGK
PAGNRNHRGGQGRPARKAGSFAPAGQGRPAGNAGRGRKRG
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
ttgaccagttttagcgaactcggcctctccgaaaaaatcgtggccggtgtcacccagctc
ggttacacaacgcctactcctattcaggaaaaggctattcctcttcttctcgaaggccgc
gacatgatcggccttgcacagaccggtaccggcaagaccgccgctttcggccttcccatt
atcgaaatgcttttgaagcagcccgaccgtccggcaaaccgcacgacccgaacgcttatc
cttgcgccaacgcgcgagttggtaaaccagatcggcgagagcctgcgtggtttcgtgcgc
aagacgcatctgaagatcaatcaggtcgttggtggcgcgtccatcaacaagcagcagcta
cagctggaaaagggcacagatattctggttgccacgcctggccgtctgctcgacctcatc
gcacgcaacgcgatttccttgtccaaggtcacgtatctcgtgcttgacgaagccgaccag
atgctggatctcggctttattcatgacctgcgcaagatttccagaatggtgcctgctggc
cgccagactcttctgttctcggcaaccatgccgaaggcaatcgccgacctcgcaggcagc
tacctgaccaaccctgttaccgttcaggtcacgcctccgggcaaggccgccgacaaggtc
gaacagtatgttcacttcgttgctggcaagaacgacaagacagaacttctgaagaagtcg
ctgacagacaacccggatggccgcgccatcgtgttcctgcgcaccaagcatggcgctgaa
aagctgtccaagcatctggagcacatcggcttcaaggtccagtcgatccatggcaacaag
agccagggtcagcgcgagcgtgcgctcaagggcttcaaggacggcgaagttcaggttctg
gtcgcaaccgacgtggcagcacgcggcatcgatattcctgccgtgacgcacgtcttcaac
tacgatctgccggaagtggccgacgcctatgttcaccgcatcggtcgtacggcgcgtgcg
ggtcgtgatggcatcgctatcgcgttctgcgcaccggacgaaacccgtctgctgcacgac
atcgaaaagctgatgaagatcgaaattccggtcctttcgggcgaacgtcctgaaggtctg
gcaagcccatcgcgcggcaacaacaaccgtggcggcaacggtggcaatcgcgccaatgcc
aacggtccgcgtcgtcagggtggtgaacgtggcgaacgcgcccatggcgaccgtcctgca
cgtggcccccgtgacggtggtcatcgcgaaggcggtcctcgtgacggcggacgccgcaac
ggcgacttccgtggccagcgtgccggcgagtttgcacctgtagagcgtgacaacgatctg
gaagtgacgtccgacttcaagcgtccgaagaccgaaggcgctgccgctgctgctggcaag
cctgctggcaaccgcaaccatcgcggtggtcagggtcgtccggcacgtaaggctggctcc
tttgcccctgccggtcagggtcgtcctgccggtaatgccggtcgtggccgcaagcgcggt
tga
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