KEGG   Agrobacterium vaccinii: HRR99_18745
Entry
HRR99_18745       CDS       T08171                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
avq  Agrobacterium vaccinii
Pathway
avq03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:avq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HRR99_18745 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:avq03400]
    HRR99_18745 (ligD)
Enzymes [BR:avq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HRR99_18745 (ligD)
DNA repair and recombination proteins [BR:avq03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HRR99_18745 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: UHS63601
LinkDB
Position
linear:803643..806324
AA seq 893 aa
MVADADKLSTYKKKRNFRLTEEPSGLKKSKESNRRRFVIQKHDATRLHYDLRLELDGVFK
SWAVTRGPSLDPNDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGDKT
PEEALAKGDFKFTLDGDRLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDDAVDKNGAAVLD
DNTTSVASGRTMDAIAAGKGKKPKPFMTRSGTVEADAVWDSSDGLAADERKAGTKTSAKA
KTTRTKPTKSTASKSAMPSFIAPQLCQSLTRPPAGKGWIHEIKFDGYRVQMGVSGGKATL
KTRKGLDWTSKWPAIAKAASALPECIIDGEICALDERGSPDFAALQAALSEGETDDLVYF
AFDLLFDGDDDLRELAVTERKDRLQALLSDAGEDPRMRFVEHFETGGDAVLKSACRLSLE
GIVSKKADAPYRSGRSDTWAKSKCRSGHEVVIGAYAKTNGKFRSLLVGVFSGKHFVHVGR
VGTGYSATTVAKLLPKLQEMEMSKSPFTGIGAPKKTDDIVWLKPELVAEIEFAGWTADGQ
VRQGAFKGLREDKPASEVEAEEPASPQDADVPDPETKKPPAKRLRKGAKEEVMGVMISSP
EKALWPDAGDGKPVTKADLAHYHEAVGDWLIDHIKGRPCSIMRSPDGICGTQFFQRHAMP
GASNLLELVTVSGDKKPYLQIDRVEGLAAIAQIGGIELHPWNCEPGQPEVPGRLVFDLDP
GPDVEFSTVVEAAREIRDRLEELGLVSFCKTTGGKGLHVVTPLAMPKNKKVSWDEAKAFA
HDVCEEMARDNPDLYLIKMAKNQREGRIFLDYLRNDRMATAVAPLSPRARQGATVSMPLN
WTQVKADLDPMRFTVRTVPNLLKKSTAWEDYCDGQRPLEQAIKHLNKVRKASS
NT seq 2682 nt   +upstreamnt  +downstreamnt
atggtcgctgatgcagataaactctctacctataagaaaaaacgtaatttccggctgacc
gaagagcccagcggcttgaagaagtcgaaagagtccaaccgccgccgcttcgtcatccaa
aagcatgacgcaacgcggttgcactacgatctgcgactagagctcgatggcgttttcaag
tcctgggccgtgaccagaggtccttctctcgaccccaacgacaagcggcttgccgtcgag
gttgaagaccatccgcttgattacggcgacttcgaaggcacgatacccaagggtcaatat
ggcggcggcacggtgatgttgtgggatcgcggttattgggagcccgaaggcgacaaaacg
cccgaggaggcattggcgaagggtgatttcaagttcacgctggacggtgaccgactgcat
ggaagctttgttctggtgcggatgcgcaatgaccgtgatggcggcaaacggacgaactgg
ctgctgatcaaacaccgcgacgacgatgccgtcgataaaaatggcgcagccgtgctggac
gataacacgacatccgtcgcgtctggccgaaccatggatgccatcgccgctggcaaggga
aaaaagccgaagccgttcatgacccgaagcgggacggtcgaagcggacgcggtgtgggat
agcagtgacggtcttgctgccgacgagcgcaaggctggaacgaaaacgtccgcgaaggcg
aagaccacgcgaacgaagccgactaaatccacagcctcgaagtcggcgatgccaagcttt
atcgcgccgcaactctgccagagcctgacgcgtcctccggcaggtaaaggctggatccac
gagatcaaatttgacggctaccgggtccaaatgggcgtgtcgggaggcaaggcaacgtta
aaaacccgcaaagggctggattggacgtcgaaatggcctgctatcgcaaaggcggcgtct
gcgctgccggaatgcatcatagacggagagatttgtgcgctggatgaacgaggttcgcca
gattttgccgcactacaagcagcgttgtcggaaggtgaaaccgatgatctcgtctatttc
gcattcgatcttctgttcgatggtgacgacgacctgagagaactggccgtgacggaacgc
aaggatcgcttgcaggccctgttgtcggatgcgggtgaggaccctcgcatgaggtttgtc
gagcatttcgagacgggcggtgatgccgtcctgaaatcggcatgccgcctatcgctggag
ggcatcgtttccaagaaggcagatgcgccttatcggtcaggtcgaagcgacacctgggcc
aaatccaaatgccgttccggccacgaagtggttatcggggcctatgccaaaaccaatggc
aaatttcgctcacttcttgttggtgttttcagcggcaagcatttcgtccacgtggggcga
gtggggacaggatacagcgcgacaacagtcgcaaaactgctaccaaagcttcaagagatg
gaaatgtccaaatctccgtttaccggcataggcgcgccaaagaagacggatgatatcgtc
tggctgaagcccgaactcgtggccgagatcgagttcgcaggctggacagcggatgggcag
gttcggcagggggcgttcaaaggtctgcgcgaagacaagcctgcctcggaagtggaagcc
gaagaaccggcatcgcctcaagacgcggatgttcccgaccccgaaaccaagaagccgcca
gccaaacgtcttcgcaaaggcgcgaaggaggaggtcatgggcgtcatgatctccagcccc
gaaaaggcgctctggccggacgcgggtgatggaaaacccgttaccaaggcagatctagcc
cattaccacgaagccgttggcgactggctgatcgatcatatcaaaggtcgcccatgctcg
atcatgagaagcccagatggcatctgtggcacgcagttctttcagcgccatgcgatgccc
ggagcctccaaccttcttgagctcgtgacggtctctggcgataaaaagccatatcttcag
atcgaccgtgtcgagggtcttgcagccatcgcccagatcggcggcatcgaactgcatccc
tggaactgcgaacccggccagcccgaggtgccgggccgtctggttttcgacctagatccc
ggtccggatgtggaattttcaactgtcgtcgaggctgcccgcgaaattcgtgaccgcctg
gaggaattgggtctcgtcagcttctgcaagacgaccggtggcaaagggctgcacgtcgtt
acccccctcgccatgccaaaaaacaagaaagtgagttgggacgaagccaaagccttcgca
catgatgtctgcgaagaaatggcgcgagataatccagatctctatttgatcaaaatggcg
aagaaccagcgcgaggggcggatttttctcgattatttgcgaaacgaccggatggcaacg
gcggttgcacccctgtcgccacgcgcaagacagggcgcaaccgtctcaatgccgctcaac
tggacacaggttaaagccgatctcgatccaatgcgcttcacagtcaggacggttcccaat
ctcttaaagaagagcacggcgtgggaggactattgtgacggccaaagaccgctggagcag
gctatcaagcatctgaacaaagtcaggaaagcctcgtcctga

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