Agrobacterium vaccinii: HRR99_18745
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Entry
HRR99_18745 CDS
T08171
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
avq
Agrobacterium vaccinii
Pathway
avq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
avq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HRR99_18745 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avq03400
]
HRR99_18745 (ligD)
Enzymes [BR:
avq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HRR99_18745 (ligD)
DNA repair and recombination proteins [BR:
avq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HRR99_18745 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UHS63601
LinkDB
All DBs
Position
linear:803643..806324
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AA seq
893 aa
AA seq
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MVADADKLSTYKKKRNFRLTEEPSGLKKSKESNRRRFVIQKHDATRLHYDLRLELDGVFK
SWAVTRGPSLDPNDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGDKT
PEEALAKGDFKFTLDGDRLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDDAVDKNGAAVLD
DNTTSVASGRTMDAIAAGKGKKPKPFMTRSGTVEADAVWDSSDGLAADERKAGTKTSAKA
KTTRTKPTKSTASKSAMPSFIAPQLCQSLTRPPAGKGWIHEIKFDGYRVQMGVSGGKATL
KTRKGLDWTSKWPAIAKAASALPECIIDGEICALDERGSPDFAALQAALSEGETDDLVYF
AFDLLFDGDDDLRELAVTERKDRLQALLSDAGEDPRMRFVEHFETGGDAVLKSACRLSLE
GIVSKKADAPYRSGRSDTWAKSKCRSGHEVVIGAYAKTNGKFRSLLVGVFSGKHFVHVGR
VGTGYSATTVAKLLPKLQEMEMSKSPFTGIGAPKKTDDIVWLKPELVAEIEFAGWTADGQ
VRQGAFKGLREDKPASEVEAEEPASPQDADVPDPETKKPPAKRLRKGAKEEVMGVMISSP
EKALWPDAGDGKPVTKADLAHYHEAVGDWLIDHIKGRPCSIMRSPDGICGTQFFQRHAMP
GASNLLELVTVSGDKKPYLQIDRVEGLAAIAQIGGIELHPWNCEPGQPEVPGRLVFDLDP
GPDVEFSTVVEAAREIRDRLEELGLVSFCKTTGGKGLHVVTPLAMPKNKKVSWDEAKAFA
HDVCEEMARDNPDLYLIKMAKNQREGRIFLDYLRNDRMATAVAPLSPRARQGATVSMPLN
WTQVKADLDPMRFTVRTVPNLLKKSTAWEDYCDGQRPLEQAIKHLNKVRKASS
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggtcgctgatgcagataaactctctacctataagaaaaaacgtaatttccggctgacc
gaagagcccagcggcttgaagaagtcgaaagagtccaaccgccgccgcttcgtcatccaa
aagcatgacgcaacgcggttgcactacgatctgcgactagagctcgatggcgttttcaag
tcctgggccgtgaccagaggtccttctctcgaccccaacgacaagcggcttgccgtcgag
gttgaagaccatccgcttgattacggcgacttcgaaggcacgatacccaagggtcaatat
ggcggcggcacggtgatgttgtgggatcgcggttattgggagcccgaaggcgacaaaacg
cccgaggaggcattggcgaagggtgatttcaagttcacgctggacggtgaccgactgcat
ggaagctttgttctggtgcggatgcgcaatgaccgtgatggcggcaaacggacgaactgg
ctgctgatcaaacaccgcgacgacgatgccgtcgataaaaatggcgcagccgtgctggac
gataacacgacatccgtcgcgtctggccgaaccatggatgccatcgccgctggcaaggga
aaaaagccgaagccgttcatgacccgaagcgggacggtcgaagcggacgcggtgtgggat
agcagtgacggtcttgctgccgacgagcgcaaggctggaacgaaaacgtccgcgaaggcg
aagaccacgcgaacgaagccgactaaatccacagcctcgaagtcggcgatgccaagcttt
atcgcgccgcaactctgccagagcctgacgcgtcctccggcaggtaaaggctggatccac
gagatcaaatttgacggctaccgggtccaaatgggcgtgtcgggaggcaaggcaacgtta
aaaacccgcaaagggctggattggacgtcgaaatggcctgctatcgcaaaggcggcgtct
gcgctgccggaatgcatcatagacggagagatttgtgcgctggatgaacgaggttcgcca
gattttgccgcactacaagcagcgttgtcggaaggtgaaaccgatgatctcgtctatttc
gcattcgatcttctgttcgatggtgacgacgacctgagagaactggccgtgacggaacgc
aaggatcgcttgcaggccctgttgtcggatgcgggtgaggaccctcgcatgaggtttgtc
gagcatttcgagacgggcggtgatgccgtcctgaaatcggcatgccgcctatcgctggag
ggcatcgtttccaagaaggcagatgcgccttatcggtcaggtcgaagcgacacctgggcc
aaatccaaatgccgttccggccacgaagtggttatcggggcctatgccaaaaccaatggc
aaatttcgctcacttcttgttggtgttttcagcggcaagcatttcgtccacgtggggcga
gtggggacaggatacagcgcgacaacagtcgcaaaactgctaccaaagcttcaagagatg
gaaatgtccaaatctccgtttaccggcataggcgcgccaaagaagacggatgatatcgtc
tggctgaagcccgaactcgtggccgagatcgagttcgcaggctggacagcggatgggcag
gttcggcagggggcgttcaaaggtctgcgcgaagacaagcctgcctcggaagtggaagcc
gaagaaccggcatcgcctcaagacgcggatgttcccgaccccgaaaccaagaagccgcca
gccaaacgtcttcgcaaaggcgcgaaggaggaggtcatgggcgtcatgatctccagcccc
gaaaaggcgctctggccggacgcgggtgatggaaaacccgttaccaaggcagatctagcc
cattaccacgaagccgttggcgactggctgatcgatcatatcaaaggtcgcccatgctcg
atcatgagaagcccagatggcatctgtggcacgcagttctttcagcgccatgcgatgccc
ggagcctccaaccttcttgagctcgtgacggtctctggcgataaaaagccatatcttcag
atcgaccgtgtcgagggtcttgcagccatcgcccagatcggcggcatcgaactgcatccc
tggaactgcgaacccggccagcccgaggtgccgggccgtctggttttcgacctagatccc
ggtccggatgtggaattttcaactgtcgtcgaggctgcccgcgaaattcgtgaccgcctg
gaggaattgggtctcgtcagcttctgcaagacgaccggtggcaaagggctgcacgtcgtt
acccccctcgccatgccaaaaaacaagaaagtgagttgggacgaagccaaagccttcgca
catgatgtctgcgaagaaatggcgcgagataatccagatctctatttgatcaaaatggcg
aagaaccagcgcgaggggcggatttttctcgattatttgcgaaacgaccggatggcaacg
gcggttgcacccctgtcgccacgcgcaagacagggcgcaaccgtctcaatgccgctcaac
tggacacaggttaaagccgatctcgatccaatgcgcttcacagtcaggacggttcccaat
ctcttaaagaagagcacggcgtgggaggactattgtgacggccaaagaccgctggagcag
gctatcaagcatctgaacaaagtcaggaaagcctcgtcctga
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