Acinetobacter venetianus: HWI77_06330
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Entry
HWI77_06330 CDS
T08415
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
avz
Acinetobacter venetianus
Pathway
avz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
avz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HWI77_06330 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avz03400
]
HWI77_06330 (mfd)
Enzymes [BR:
avz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HWI77_06330 (mfd)
DNA repair and recombination proteins [BR:
avz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HWI77_06330 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
Glyco_tran_WecG
ERCC3_RAD25_C
UB2H
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QNH52363
LinkDB
All DBs
Position
1328978..1332439
Genome browser
AA seq
1153 aa
AA seq
DB search
MFQQEISQLNLQQFKAGEKRWIGSLLGSSAALLFKEIATQNTNLYVIVARNNQHLAQLES
ELEFYGIKPTIFPDWEILPYDRLSPHQDIVSERLALLSNMPQKGILLIAASTLAQRVAPY
SWVVGEHFDIKVGQKLDLETQKKQLVQAGYRLVDTVYDHGEFAVRGSIMDIYASGQDQPI
RIDLFDDEIESLKFFDPETQRTTESLKNFTVLPAKEFPLKEGRSTFRDRYAESFPTANPK
KNPIYQDVLEGIATPGLEFYLPLFFDKKLMESQSTLMTYLPKNCVVITNNEIEDELINFW
KEVVRRYEDRRHNIDQPILPPEDLFLMPNHVLQALNQFPRILASADAFDAKSGVLNLAAE
QPPKLAVDPKKEQPFEAVKHYIDQAKHPVLLVAESAGRRETLKDALRSVLGEIQNVESFA
QFQKEQLHVAITSAPLDRGLLLTGQLSVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELSIGAPVVHIDHGVGRYAGLITLEIDQQDHEFLQLDYADGAKVYVPVTNLHLISRYSGG
DPDLAPLHKLGTDTWSKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDHTGYMQFSS
GFAYEETLDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVL
VPTTLLAQQHYESFKDRFADTAVRIEVLSRFGSNKTHLKTIEDLAEGKVDIVIGTHKILQ
ESIQFKNLGLMIVDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTDDSVKEAILRELLRGGQVYFLHNEVDTIERAAENIRNLVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSLTAEINLHMPALIPDD
YLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGIPPQPVKQLFSVHQVRLRAEQLGI
TKIDINSNGGYIEFAPDTPVQAMSIIQLMQKNPTYYRMEGGQRLKVMVQLAEYDKRIQFI
VDLLNKLLTELHS
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaacaagaaatctctcaattaaacttacaacaattcaaagcgggcgaaaaacgc
tggattggttcattactcggatcatcagcagcactattatttaaagaaattgctacgcag
aatactaatctatatgtgattgtcgcaagaaataatcagcaccttgctcaacttgaaagt
gaacttgagttctatggcatcaagccaacgattttccctgattgggaaattttgccttat
gaccgtttgtctccacatcaggatattgtttctgagcgtttggcacttctttccaatatg
ccacaaaagggcattttgctgattgctgccagtacgttagcgcaacgtgtcgcaccatat
tcgtgggttgtgggcgaacactttgatattaaagttggtcaaaagcttgatttagaaaca
cagaaaaagcaactggtacaagcgggctatcgcttggttgatacggtttatgatcatggt
gagtttgcagttcgtggcagtattatggacatttacgcatctggacaagatcagccgatt
cgtatcgacttatttgatgatgaaattgagagcttaaaattctttgatccagaaacgcaa
cgtactacggaatccctaaaaaacttcactgttttacctgcaaaagaatttccacttaag
gaaggacgctctacatttcgagatcgttatgctgaaagcttcccaactgccaatccaaag
aaaaatccaatttatcaagatgtgctagaggggattgcaacccctggtttagaattttat
ctaccattatttttcgataagaaattgatggagtcacaaagtacgcttatgacgtaccta
ccaaagaattgcgttgtcattacaaataatgaaattgaagatgagttaattaatttctgg
aaagaagttgtgcgtcgatatgaagatcgtcgtcacaatattgatcaaccgattcttccg
ccagaagatttatttttaatgccaaatcacgtattgcaggcactcaaccaatttcctcgt
attttggcctctgcagacgcatttgatgccaaatcaggtgtgttgaatcttgctgctgaa
caaccacccaaattagcagttgatcccaaaaaagagcaaccttttgaagcagtcaaacat
tatatcgatcaagctaagcatcctgttttactcgtcgccgagagtgctggtcgtcgtgag
accttaaaagatgcactacgttctgtattgggggaaattcagaatgtagaaagttttgca
caatttcaaaaagaacaattacacgttgcgattaccagtgcacctttagatcgtggtttg
ctgctcacaggtcaattatctgttatttctgaaaaccaactttatgagcatcgtgtggta
caacgccgccgaaaacgccaacaagaagtttcagaagagtttttaattcgcagtttaact
gagctgagtattggtgcgcctgtcgtacatattgatcatggtgttggacgttatgcgggg
ctgattacattagaaattgatcagcaagatcacgagtttttgcagctcgattatgccgat
ggtgcaaaagtttatgtgcctgtgaccaacctacatctgatcagtcgatacagcggtggt
gatccagaccttgcgccattacataaactcggcacggatacttggagtaaagcgaaacgc
aaagcgcttgaacaaattcatgatgttgctgctgagctgctgcatattcaagctcgccgt
caatctaaacctggttttgcgtttgagttggatcatactggctatatgcagttttccagt
ggttttgcctatgaagaaacactggatcaagccaatgcaattgaagcaactttgcatgac
atgcaacttgccaaaccgatggatcgtttggtctgtggtgatgttggctttggtaaaact
gaagtagcaatgcgcgctgcctttgttgcggtgcaaaatggcaaacaagttgctgtactt
gttccaaccacacttttagctcagcagcattatgaatctttcaaagatcgttttgccgat
accgcggttcgaattgaagtgctttctcgttttggtagcaataaaacccatttgaaaacg
atcgaagatttagctgagggcaaagtcgatatagtgattggaacacataagattttgcaa
gaaagtattcagtttaaaaatttgggtttgatgattgttgatgaagaacatcgttttggt
gttcgagataaagaacgcatcaaagcactacgtgcagatgtcgatatgttgaccctgact
gcgacaccgattccgcgtacgctaaatatggcattctcaggaatgcgggatttatcgatt
atcgcgactccacctgcacgccgcttagcagtaaaaacatttgtacaagagcatacagat
gattctgtgaaagaggcgattctgcgtgagttgttacgtggtggtcaggtgtatttctta
cataatgaagtcgatacgattgaacgagcagcggaaaacattcgcaaccttgtgcctgaa
gcgcgtgttgcagttgcacatggtcagatgcgtgaacgtgaactcgagcaagtgatgcaa
cagttctaccataaagaatacaatgtcttggtctgctcgacgattattgaaactgggatt
gatgttccaaatgccaataccattttaatagaacgtgctgacaaactcggtttggcacag
ttgcatcaactacgtggtcgtgttggacgttcacatcaccaagcctatgcctatttatta
gttccatccattaaacatctcaaaggtgatgctgaaaaacgtttagatgcaattcaacgt
gcttcgactttgggcgcaggtttcatgctggcaaccgaagatttggaaattcgtggtgca
ggtgaactacttggtgaacaacaaagtggttcaatgcaagcgattggttatagcctgtat
atggaaatgttggaaaaagccaccaaagcaattcaaaaaggtaaaacccctaatttcgat
gcaccattgtcacttactgctgaaatcaacctgcatatgccagcactgattcctgatgat
tatttgggagatgtacatcagcgtttactcttttataaacgtattagtaataccgataca
caagagaagcttgataatatccgtatggaattgattgatcgctttggtattcctccgcaa
ccagtgaagcaattattcagtgtgcatcaagttcgtttgcgagcagagcaattaggcatc
actaaaattgatatcaatagtaatggtggttacattgagtttgcacctgatacgccagtg
caagcgatgagcattattcaactcatgcaaaagaatccaacctactatcgtatggaaggt
ggtcagcgcttaaaagtcatggtgcaattggctgagtacgataaacgcatccaatttatt
gttgatttgctgaataagcttcttactgaattacatagttag
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integrated database retrieval system
