Actinomyces weissii: JG540_08825
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Entry
JG540_08825 CDS
T07198
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
awe
Actinomyces weissii
Pathway
awe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
awe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JG540_08825 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
awe03400
]
JG540_08825 (mfd)
Enzymes [BR:
awe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JG540_08825 (mfd)
DNA repair and recombination proteins [BR:
awe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JG540_08825 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_22
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QQM67121
UniProt:
A0A7T7M900
LinkDB
All DBs
Position
complement(2177226..2181065)
Genome browser
AA seq
1279 aa
AA seq
DB search
MRLTALLPLLLEEPDTAALVEAAARSARTDRTLVVPAGARPAVLAAMSLGAQGVAQAAGA
QPPAPASGTADGGTADDGGAGRAVPTGAARTSLSSAASSSAASSSADPARTGTPLLVVTA
TGREADELAAALGCYLPAAEVAVFPAWETLPHERLSPRADTVATRLAVLRRLAHPQEDDG
APDAAARGPVRVLVVPVRALLAPVIAGLGELEPVHLAPGVAVSLEEVTRRLTDAAYTRVD
MVESRGEFAVRGGILDLFPPTSPRPVRVDFFGDEIEEVSSFSVTDQRSIEPLASVTATAC
RELRLTEAVRQRAARLVDQVPGAADMLEKIAQGQVVEGMESLAPVLVDQMVPLLDLVGER
LVVLCEPERVRKRAEDLVATTKEFLAAAWTSAASGGSTPVDLSAAAFAHLSEARALALST
NRGWWSLTSLQASPETAVLPLRDPTSYRGRLEEAVQDIGQMAREGWSVVVATDGPGPGRR
MAQLLGDGEVPSRIVTELTQAAQLRGQEGADGVVRVTQAAAGHGFVAPGVRLALLAESDL
TGRASTGPRERKAVPARRSRKSVDPLSLRPGDLVVHAQHGVGRFLELARRSVGSAGSAAS
REYLVIEYAPSKRGQPGDRLLVPTDSLDQVSKYVGGQDPALNKMGGADWARTKSKARKAV
REIAAELVRLYAARSAATGHAFGPDTPWQAELEEAFPYTETPDQLATIEDVKRDMESPQP
MDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVSQHAETFSERYAGFPVRVA
QLSRFQSDKESQEVLDGLAQGSIDVVVGTHRLITGQVRFKDLGLVVIDEEQRFGVEHKET
LKALRTDVDVLSMSATPIPRTLEMAVTGLREMSTLATPPEDRHPILTYVGAYETKQVGAA
IRRELLRDGQVFFVHNKVEDIDAVAARLSQQVPEARVATAHGQMGEHQLERVIDDFWHKE
IDVLVCTTIVETGLDVSNANTLIVDRADRMGLSQLHQLRGRVGRGRERAYAYFLYPGDRT
LTETSLERLRTIATNTDLGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVSE
AVSAYKKALRVGAGEQGADAAAVAAGRAEAEIDEELRVELPVDATIPEDYVSHERLRLEA
YTKFASARSQEDVADVLEELADRYGPVPEAVSRLAALARLRALAASLGVREVVAQGRSVR
FAPVTLAESGRMRATRLYPGTVLKPATRTIVVPAPGSARLGGGAVEGEELLRWAEVLLRA
VVAGDPDYELEATRYRRRR
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtctgaccgctctgctgccactgcttctggaagaacctgacaccgcggccctggtg
gaggccgccgcccgctccgctcgcacggaccggaccctggtggtacctgctggggcccgc
ccagcggtgctggccgccatgagcctgggagcccagggggtggcccaggccgccggtgcg
cagccgcccgcccccgccagcggcacggctgacggcggcacggctgacgacggcggggcg
ggccgggcagtccccaccggcgctgcccgtacctccttaagcagcgccgcctcaagcagc
gccgcctcaagcagcgccgacccggcccgtaccggcaccccgttgctcgtggtcaccgca
accgggcgggaggccgacgagctggccgccgccttgggctgctacctgcctgccgcggag
gtcgccgtcttccccgcctgggagaccctgccccacgagcggctctccccccgcgccgac
accgtggccacccgcctggccgtgctgcggcgtctggcccacccgcaggaggacgacggc
gccccggacgcggcggcccgcggccctgtccgggtcctggtggtgccggtgcgggcgctc
ctggccccggtgatcgcggggctgggcgagctcgagcccgtgcacctggcccccggcgtc
gccgtcagcctggaggaggtcacccgcaggctcaccgacgccgcctacacgcgggtggac
atggtggagagccgcggggagttcgcggtgcgcggcggtatcctggacctgttcccgccc
accagcccccggcccgtgcgcgtggacttcttcggggacgagatcgaggaggtctccagc
ttctcggtaaccgaccagcgcagcatcgagcccctggcctcagtgaccgccaccgcctgc
cgggagctgcggctgaccgaggccgtgcgccagcgcgccgcccggctcgtggaccaggtg
cccggggccgccgacatgctggagaagatcgcccagggccaggtggtggagggcatggag
tccctggcccccgtgctggttgaccagatggtgccgctgctggacctggtgggggagcgc
ctggtggtcctgtgcgagccggagcgggtgcgtaagcgggccgaggacctggtggccacc
accaaggagttcctggccgctgcctggaccagcgccgccagcggcggctccaccccggtg
gacctgtccgccgccgcattcgcccacctgtctgaggcccgggccctggccctgtccacc
aaccggggctggtggtcgctgacctccctgcaggcctccccggagacggccgtgctgccg
ctgcgtgaccccacctcctaccgggggcgcctggaggaggccgtccaggacatcggccag
atggcccgggaggggtggagcgtcgtcgtggccaccgacggccccgggccaggccgccgc
atggcccagctgcttggcgacggcgaggtgccctcccgcatcgtcaccgagctcacccag
gccgcccagctgcgcggccaggagggggccgacggcgtcgtgcgcgtcacccaggcggcc
gccggtcacggcttcgtggcccccggggtgcgtctggccctgctggccgagtccgacttg
accggccgggcctccaccggcccccgcgagcgcaaggccgtgcctgcccgccgctcccgc
aagagcgtggacccgctgtcgctgcgccccggcgacctggtggtccacgcccagcacggg
gtggggcgcttcctggagctggcccgccgtagcgtgggctccgccgggtccgccgccagc
cgcgagtacctggtgatcgagtacgccccctccaagcgcggccagccgggggaccggctg
ctggtgcccaccgactcactggaccaggtcagcaagtacgtgggagggcaggacccggcc
ctgaacaagatgggcggggccgactgggcccgcaccaagtccaaggcccgcaaggcggtc
cgcgagatcgccgccgagctggtgcgcctctacgccgcccgctccgccgccaccgggcac
gccttcggcccggacaccccctggcaggccgagctggaggaggccttcccctacaccgag
acccccgaccagctggccaccatcgaggacgtcaagcgggacatggagtccccccagccc
atggaccgcctcatctgcggggacgtcggctacggcaagaccgagatcgccgtgcgcgcc
gccttcaaggccgtgcaggacggcaagcaggtggcggtgctggtgcccaccaccctgctg
gtcagccagcacgcggagaccttctccgagcgctacgcgggcttcccggtgcgcgtggcc
cagctctcccgcttccagtcggacaaggagtcccaggaggtcctggacggcctggcccag
ggcagcatcgacgtcgtggtgggcacccaccgcctgataaccgggcaggtgcgcttcaag
gacctgggcctggtggtgatcgacgaggagcagcgcttcggggtggagcacaaggagacc
ctcaaggccctgcgcacggacgtggacgtgctgtccatgtccgccacccccatcccccgc
accctggagatggcggtcacgggcctgcgggagatgtccaccctggccacgcccccggag
gaccgccaccccatcctcacctacgtgggcgcctacgagaccaagcaggtgggggccgcc
atccgccgcgagctgctgcgcgacggccaggtgttcttcgtgcacaacaaggtggaggac
atcgacgccgtcgccgcccgcctgtcccagcaggtccccgaggcgcgggtggccaccgcc
cacgggcagatgggcgagcaccagctggagcgggtgatcgacgacttctggcacaaggag
atcgacgtgctggtgtgcaccacgatcgtggagaccggcctggacgtgtccaacgccaac
accctgatcgtggaccgggccgaccgcatgggcctgagccagctccaccagctgcgcggg
cgcgtgggccggggccgggagcgggcctacgcctacttcctgtacccgggtgaccgcacg
ctcacggagacctccctggagcggctgcgcaccatcgccaccaacacggacctgggggcg
ggcatgcaggtggccatgaaggacctggagatccgtggcgccgggaacctcctgggcggg
gagcagtccgggcacatcgccggggtgggcttcgacctgtacgtgcgcatggtctccgag
gcggtcagcgcctacaagaaggcgctgcgcgtcggggccggggagcagggggccgacgcc
gccgccgtggcggccggacgcgccgaggcggagatcgacgaggagctgcgcgtcgagctg
cccgtggacgccaccatcccggaggactacgtgtcccacgagcgcctgcgcctggaggcc
tacaccaagttcgcctccgcccgcagccaggaggacgtcgccgacgtgctggaggagctg
gccgaccgttacgggccggtgccggaggctgtctcccgcctggccgccctggcgcgcctg
cgggcgctcgcggccagcctgggggtgcgggaggtggtggctcagggccgctcggtgcgc
ttcgcgccggtgaccctggcggagtccgggcggatgcgggccacccgcctgtacccgggc
acggtgctcaagcccgccacccgcaccatcgtggtgccggcgccggggtcggcccgcctg
ggcgggggcgccgtggagggcgaggagctgctgcgctgggcggaggtgctgctgcgggcc
gtcgtcgccggggacccggactacgagctggaggcgaccaggtaccgacggcgccgctga
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