Aeromicrobium wangtongii: NQV15_03575
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Entry
NQV15_03575 CDS
T09548
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
awn
Aeromicrobium wangtongii
Pathway
awn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
awn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NQV15_03575 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
awn03400
]
NQV15_03575 (mfd)
Enzymes [BR:
awn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NQV15_03575 (mfd)
DNA repair and recombination proteins [BR:
awn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NQV15_03575 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UUP14406
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All DBs
Position
710152..713688
Genome browser
AA seq
1178 aa
AA seq
DB search
MTLQPLASLVATEPTLAQALADRLDGRQELHLRAPEPLRPFLANALAQQSSVLAVTATAR
EAEDLTTQLGELLGAESVAYYPAWETLPHERLSPRSDTVGRRLAVLRRLVHPTAPGALDS
ETASGPLRVVVAPVRSLLQPQVKGLADLEPVELRKGDEVALEQVVRDLAGAAYSRVDLVE
RRGEFAVRGGIIDVFPPTEEHPLRIEFFGDEVDEIRRFAVADQRTLEAVTHVWAPPCREL
LLTDEVRAKAAELAAAHPSLAEIFSKLAEGHAVEGMESLTPVLTDEMESFVNLLPERSAI
VLMDPERIRARAADLVATSEEFLQASWAAAAGGGESPIDLGSAAFHTLEEVREETLGLGH
TWFTQSPFGLDDEGDEAIRTVDMEPSAAYRGDTTAALTDIRRWTESGMRVVFVAPATGQA
QRTLEWLTDGGVAASLDDTVTGPSARVVQVSIGELEHGFVSQPLQLAVMTYDDLVGQRAA
DRTERKMPARRRKQVDPLELKTGDFVVHEQHGVGKYVELMQRVVQGAAREYLVIEYAPSK
RGQPADRLFVPMDQLDQISRYVGGESPSLDRLGGADWTTRKNKARKAVRQIAGELIKLYA
ARQATKGHAFGPDTPWQAELEDSFAFVETPDQMVTIDEVKRDMERSVPMDRLVCGDVGYG
KTEIAVRAAFKAIQDGKQVILLVPTTLLVQQHYATFAERFGQFPVTMKPLSRFQTEKESK
ETLAGLADGSIDMVIGTHRLLQPGVKIKDLGLVIVDEEQRFGVEHKEAMKMLRAAVDVLS
MSATPIPRTLEMAITGIREMSTIATPPEERHPVLSFVGPYEDRQVIAAIRRELLREGQAF
YIHNRVQSIDKAVARIKELVPEARVAAAHGQMGEHQLEEVMVDFWEKRYDVLVCTTIVES
GLDVSNANTMIIERADTLGLSQLHQLRGRVGRSRERAYAYFLYPPEKPLTETAHDRLATI
AQHSELGGGMAVAMKDLEIRGAGNLLGGEQSGHIADVGFDLYVRLVGEAVAEFRGDAEPE
REVKIELPIEAHLPHDYVGSERLRLEMYKRLADVRALSDVDEIRVELVDRYGEPPEAVDV
LLDVARLRVRVREAGLSEVTAAGPNIRFSGLKLADSAQMRLSRVYPRSTYKVAAEVALVP
RPKTAPVGGTPLVGRELLEWTRTVIDTLVPAAVPAPAV
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgaccttgcagcccctcgcgtctctcgtagccaccgaaccgactctcgcgcaggcgctg
gccgaccgcctcgacggacgccaggagctgcacctgcgggccccggaaccgctgcgcccc
ttcttggccaacgcgctggcccagcagtcctcggtgcttgccgtgaccgcgaccgcacgc
gaggccgaggacctcacgacccagctgggcgagctgctgggtgccgagtcggtcgcctac
tacccggcctgggagacgttgccgcacgagcgcctgtccccgcgctcggacaccgtcggc
cggcggctggccgtgctgcgccggctggtccacccgaccgcgcccggcgcgctggactcc
gagaccgcgagcgggccgctgcgtgtcgtggtggccccggtccgctcgctgctgcagccg
caggtcaagggactggccgatctcgagcccgtcgagctgcgcaagggcgacgaggtcgct
ctggagcaggtggtccgtgacctcgcgggcgccgcctactcccgcgtcgacctggtggag
cggcgtggtgagttcgccgtgcgcggcgggatcatcgacgtcttcccgcccaccgaggaa
catcccctgcgcatcgagttcttcggtgacgaggtcgacgagatccgccggttcgcggtc
gccgaccagcgcacgctcgaggcggtcacccacgtgtgggccccgccgtgtcgcgagctg
ctgctgaccgacgaggtgcgcgcaaaggccgccgagctggccgccgcccatccgtcgctg
gccgagatcttctccaagctggcggaggggcacgccgtcgagggcatggagtcgctgacc
cccgtgctgaccgacgagatggagtcgttcgtcaacctgctgccggagcggtcggcgatc
gtgctgatggaccccgagcgcatccgggcccgtgccgccgatctcgtggcgaccagcgag
gagttcctccaggcgtcgtgggcggccgccgccggcggtggtgagtcgccgatcgacctc
ggttccgcggcgttccacacgctcgaggaggtgcgtgaggagacgctcggcctggggcac
acctggttcacccagtcaccgttcggtctggacgacgagggtgacgaggcgattcggacc
gtcgacatggagccgtccgcggcctaccgcggtgacacgacggcggcgctgaccgacatc
cgccgctggaccgagagcggcatgcgggtcgtcttcgtggccccggcgaccgggcaggcc
cagcgcacgctggagtggctgaccgacggtggggtggccgcctcgctggacgacaccgtc
actggtccgtccgcccgcgtcgtgcaggtcagcatcggcgagctcgagcacggcttcgtc
tcccagcccctgcagctggccgtcatgacgtacgacgacctggtggggcagcgcgccgct
gaccgcaccgagcgcaagatgccggcccgccgccgcaagcaggtcgatccgctcgagctc
aagaccggcgacttcgtggtccacgagcagcacggcgtgggcaagtacgtcgagctgatg
cagcgcgtcgtgcagggtgcggcccgcgagtacctcgtgatcgagtacgcgccgtccaag
cgcgggcaaccggctgaccggctgttcgtcccgatggaccagctcgaccagatcagccgg
tacgtcggcggcgagtcgccgtcgctggaccgcctcggtggtgccgactggacgacccgc
aagaacaaggcgcgcaaggccgtccgtcagatcgccggcgagctgatcaagctctacgcc
gcgcgtcaggcgaccaagggtcacgccttcggccccgacacgccctggcaggccgagctc
gaggactccttcgcgttcgtcgagacgcccgaccagatggtcacgatcgacgaggtcaag
cgcgacatggagcgcagcgtcccgatggaccgcttggtgtgcggcgacgtgggctatggc
aagaccgagatcgcagtgcgtgcggcgttcaaggcgatccaggacggcaagcaggtcatc
ctgctcgtcccgacgaccctgctcgtgcagcagcactacgcgacgttcgccgaacggttc
ggccagttcccggtcacgatgaagccgctgtcgcggttccagaccgagaaggagagcaag
gagacgctcgccggcctggccgacggctcgatcgacatggtcatcggcacccaccggctg
ctgcagcccggcgtcaagatcaaggacctgggtctcgtgatcgtcgacgaggagcagcgg
ttcggcgtcgagcacaaggaagccatgaagatgctgcgcgcggcggtcgacgtcctgtcg
atgtcggcgacgccgatcccgcgaaccctcgagatggccatcaccggcatccgggagatg
tcgacgatcgcgaccccgccggaggagcggcaccccgtgctgtcgttcgtcgggccctac
gaggaccgccaggtcatcgccgcgatccgccgcgagctgctgcgcgaggggcaggccttc
tacatccacaaccgggtccagagcatcgacaaggccgtcgccaggatcaaggagctcgtg
cctgaggcgcgcgtcgccgcggcccacggccagatgggcgagcaccagctcgaggaggtc
atggtcgacttctgggagaagcgctacgacgtcctggtctgcaccacgatcgtcgagtcc
ggcctggacgtgtccaatgccaacaccatgatcatcgagcgcgccgacaccctgggcctg
tcgcagctgcaccagctgcgcggccgcgtcggacgttcacgggaacgcgcctacgcctac
ttcctgtacccgccggagaagccgctgaccgagaccgcgcacgaccggctggccacgatc
gcccagcactccgagctgggcggcggcatggcggtcgcgatgaaggacctggagatccgc
ggtgcgggcaacctgctcggcggcgagcagtccgggcacatcgccgatgtcggcttcgac
ctgtacgtgcggctggtcggcgaggccgtcgcggagttccgtggcgatgccgagcctgag
cgcgaggtcaagatcgagctgccgatcgaggcccacctgccgcacgactacgtcggcagc
gaacgcctgcgactcgagatgtacaagaggctcgcggatgtccgcgcgctgtcggacgtc
gacgagatccgcgtcgagctggtggaccgctacggcgagccgcccgaggccgtcgacgtc
ctgctggacgtcgcccggttgcgggtccgggtccgcgaggccggcctcagcgaggtcacc
gcggccggaccgaacatccggttcagcggtctcaagctggccgactcggcgcagatgcgc
ctgtcgcgcgtctacccgcgcagcacctacaaggtggcggccgaggtcgcactggtgccg
cgtccgaagaccgctccggtcggcggcacgccgctggtcggtcgtgagctgctggagtgg
acccgcacggtcatcgacaccctcgtccccgcggcggtccccgcccccgccgtctga
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