Acetobacterium woodii: Awo_c23680
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Entry
Awo_c23680 CDS
T01732
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
awo
Acetobacterium woodii
Pathway
awo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
awo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Awo_c23680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
awo03019
]
Awo_c23680
03009 Ribosome biogenesis [BR:
awo03009
]
Awo_c23680
Enzymes [BR:
awo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Awo_c23680
Messenger RNA biogenesis [BR:
awo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Awo_c23680
Ribosome biogenesis [BR:
awo03009
]
Prokaryotic type
rRNA helicases
Awo_c23680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Helicase_RecD
AAA_19
UvrD-helicase
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFA49141
UniProt:
H6LD96
LinkDB
All DBs
Position
complement(2776315..2777805)
Genome browser
AA seq
496 aa
AA seq
DB search
MIETKFNQYHLSDELLKAIEKLNFKNPTKVQEAVIPIALEKNDILCKAQTGSGKTAAFGI
PICELLDWEENKPQVLVLTPTRELALQVHEDIFNIGRFKRVKVSALYGKSPIRRQEKELK
QKTHVVVGTPGRVLDHIERGNFITDEIKYLIIDEADEMLNMGFIDQVEEIINELPKNRVT
MLFSATLENEIQRLSQKYMNNPKIIEIEAEAKRTDAIEQFVYKTGNVDKLEVLNNVLVLE
NPDSCIVFCNTQERVNAIFNLLGKNNKAFEKIHGGMEQDERTQVMQRFKKGAFRYLIATD
VAARGIDVHEISLVINYDVPWEKETYIHRIGRTGRRGTMGKAITLVSVKEGRLFSDIEAY
TDKKIIARECPTVADVAALKSAFVEKLLKKPEEKIDKAHDLTKEITKIHINAGKKTKMRP
VDIVGTLCNLEGMTAADIGVITILDVSTFVEILNNKGPQVLKELQTRNIKGRLRKVTLAE
DKPVTIARKKPIRRFY
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaaccaagtttaaccagtaccacctcagtgatgagttattaaaagcgattgaa
aagctgaactttaaaaatccaaccaaggttcaggaggccgttattccgattgccctggaa
aaaaacgatattttgtgtaaggcccaaaccggcagtgggaaaacggcagcttttggaatt
ccgatttgtgagttgttggattgggaggaaaataaaccacaggttttggtgttaacaccg
actcgggaactggcgttgcaggtgcatgaagatatttttaatattggccgatttaaacgg
gtgaaggtttcagcactttacggaaaatcaccgattcggcgtcaggaaaaagaattaaaa
cagaaaacacatgtggtggtggggactcccggccgcgttttagaccatattgaacgggga
aactttattaccgatgaaattaaatatttgattatcgacgaagccgatgagatgctaaac
atgggttttattgatcaggtcgaggaaataatcaatgagctgcctaaaaatcgtgtgacg
atgcttttttcggcgacactcgaaaatgagattcagcggctctcgcagaaatatatgaat
aatcctaaaatcattgaaattgaggctgaagctaaacgcaccgatgcgattgaacaattt
gtttataaaaccgggaatgttgataaattggaggtgctaaataatgttttagtgctggaa
aatcccgacagctgcattgttttttgtaatactcaggaacgggtaaatgcgattttcaat
ttattgggaaaaaataataaggcgtttgaaaaaatccatggcggaatggagcaggatgag
cggacccaagtaatgcagcgttttaaaaaaggggcattccgctatctaattgctacggat
gtggcagcccggggaatcgatgtccatgaaatttctttagtgatcaattatgatgtgccg
tgggaaaaagaaacttatattcatcggattggacggaccggacggagagggacgatggga
aaagcgatcaccctggtttccgtaaaagaaggccgactatttagcgatattgaagcgtat
accgacaaaaaaataatagcaagggaatgtccaaccgtagcagatgtagcggctttaaaa
tcagcttttgtggaaaaactgttaaaaaaaccggaagagaaaattgataaagcacatgat
ttaacaaaagaaattaccaaaattcatatcaatgccggaaaaaagacaaaaatgcgacca
gtcgatattgtgggaacgttatgtaatttagagggaatgactgcagcagatattggtgtg
atcaccattttggatgtttcgacctttgttgaaatattaaacaacaaagggccacaggtg
ctaaaagaactgcaaacccgcaacataaaaggacgactaagaaaggtaactctggctgaa
gataaaccggtaaccattgccagaaagaaaccgattcgtcgtttttattaa
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