Achromobacter xylosoxidans NBRC 15126 = ATCC 27061: AX27061_1393
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Entry
AX27061_1393 CDS
T02964
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
axn
Achromobacter xylosoxidans NBRC 15126 = ATCC 27061
Pathway
axn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
axn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AX27061_1393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
axn03400
]
AX27061_1393
Enzymes [BR:
axn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AX27061_1393
DNA repair and recombination proteins [BR:
axn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AX27061_1393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
Glyco_tran_WecG
SNF2-rel_dom
UB2H
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AHC45858
LinkDB
All DBs
Position
complement(1521673..1525155)
Genome browser
AA seq
1160 aa
AA seq
DB search
MPAPSLMPAPTSSATVAPPVPATAPTLAALKPGTRYAQPRPPGSGDAWLLADLARQAGAP
LVVLTAEPLEAQRLAEEIALFAPGLRVRQLPDWETLPYDAFSPHQDLISERLHTLHSLMM
KTVDVLTVPVTTALYRLAPPSFLAAYTFSFKQKDKLNEAALRAQLTLANYNHVTQVTAPG
EFCLRGGLIDLFPMGSALPYRLDLFDDEIETIRSFDVDTQRSLYPVREVQLLPGREFPMD
EESRNRFRARFREVFEGDPSRALPYKDIGNGIPFAGVEYYLPLFFDETATLFDYLAEGTL
TVTVGDIDDAMMRFSQDTGSRYGFLKSDRERPVLPPSALFLDEQALYARLKDFRRLALGA
GQPHPDFRAAPDVSVARRAEDPIAKLRALVGRHDGRVLLCADSAGRRETLVQMLNEFGVT
PDAQPETIEAFLASDAHFGIVAAPLATGFELPQAGLAFLTENDLYPGVAATGRRGKRDQE
RASNVEAMVRDLSELRAGDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLEYANGSTLYVP
VSQLHVIARYSGADPEAAPLHQLGSGQWDKARRKAAKQVRDTAAELLALYAQRAAREGFA
FNLPLNDYQAFAEGFGFEETADQAAAIEAVIADMTSGRPMDRLVCGDVGFGKTEVALRAA
FLAVANGKQVALLCPTTLLAEQHAQTFSDRFADWPVRVVELSRFRSAKEVSAAIEGINDG
RVDIVIGTHKILSKDVKFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRT
LGMSLEGIRDFSVIATAPQKRLAIKTFVRREDGSTLREALLRELKRGGQCYFLHNEVETI
HNRRARLEELVPEARIAVAHGQMPERDLEQVMKGFYQQRYNVLLCTTIIETGIDVPSANT
IVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITSNAKKRLEAIQAMEELGSG
FYLAMHDLEIRGTGEVLGDSQSGNIQEVGFSMYNEMLNEAVRALRAGEEPDLDAPFNLAC
EVNLHAPALLPSDYCADVHARLSVYKRLAHAADEDDLIQIQEELIDRFGKLPEAAQTLLT
THRLRLAAQPLGIVKIDASETQALLQFGPKTSVDPAKIIELVQRQRHIKLAGQDKLRVEI
KAAQIPARADAVRAVLRALK
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctcccagcctgatgcccgctcccacctcctccgccacggtagcgccgcccgtc
cccgcgaccgcccccactctcgccgcgctcaagcccggcacgcgctatgcgcaaccccgg
ccgcccggctcgggcgatgcctggctgctggccgacctggcccggcaggccggcgcgccg
ctggtggtgctgaccgcggagccgctggaagcccagcgcctggccgaggaaatcgcgctg
ttcgcgcccggcctgcgggtgcgccagctgcccgactgggaaaccctgccgtacgacgcc
ttctcgccgcaccaggacctgatctccgagcgcctgcataccctgcattcgctgatgatg
aagacggtggacgtgctcacggtgccggtcaccaccgcgctgtaccggctggcgccgccg
tcgttcctggcggcctacaccttctccttcaagcagaaggacaagctcaacgaagcagcg
ctgcgcgcgcagctgacgctggccaactacaaccacgtcacccaggtcaccgcgcccggc
gagttctgtctgcgcggcggcctgatcgacctgttcccgatgggatcggcgctgccctac
cggcttgacctgttcgacgacgagatcgagaccatccgcagcttcgacgtcgacacccag
cgcagcctgtacccggtgcgcgaggtgcaactgctgccggggcgcgaatttcccatggac
gaggaatcgcgcaaccgcttccgcgcgcgattccgcgaagtgttcgaaggcgatccctcg
cgcgccctgccctacaaggacatcggcaacggcatccccttcgccggggtcgagtactac
ctgccgctgttcttcgacgagacggccacgctgttcgactacctggccgaaggcacgctc
accgtcacggtcggcgacatcgacgacgccatgatgcgcttcagccaggacaccggcagc
cgctatggcttcctgaaaagcgaccgcgaacggccggtgctgcccccgtccgcgctgttc
ctggacgagcaggcgctgtacgcccgcctgaaggatttccgccgcctggcgctgggcgcc
ggccagccgcatcccgacttccgcgccgcgcccgacgtcagcgtcgcgcgccgcgccgaa
gacccgatcgccaaactgcgcgcgctggtggggcggcacgatggccgcgtgctgctgtgc
gccgattcggcgggccggcgcgagacgctggtgcagatgctgaacgagttcggcgtcacg
cccgacgcgcaacccgagaccatcgaggcctttctcgcgtccgacgcccatttcggcatc
gtcgccgcgcccctggccaccggcttcgagctgccgcaggccgggctggcgttcctgacc
gaaaacgacctgtatcccggcgtcgccgccaccggccggcgcggcaagcgcgaccaggaa
cgcgccagcaacgtcgaagcgatggtgcgcgacctgtccgaactgcgcgccggcgacccg
gtggtgcacgcgcagcacggcatcggccgctaccacggcctggtcaacatggacatgggc
gaaggcgagatggagttcctgcatctcgaatacgccaacggcagcacgctgtacgtgccg
gtgtcgcagttgcacgtgatcgcccgctacagcggcgccgatccggaagccgcgccgctg
caccagctcggctcgggccagtgggacaaggcgcgccgcaaggcggccaaacaggtgcgc
gacaccgccgccgaactgctggcgctgtacgcccagcgcgccgcgcgcgagggcttcgcc
ttcaacctgccgctgaacgactaccaggccttcgccgaaggcttcggcttcgaggaaacg
gccgaccaggccgccgccatcgaggccgtgatcgccgacatgacctcgggccggccgatg
gaccgcctggtgtgcggcgacgtcggcttcggcaagaccgaggtggcgctgcgcgccgcg
ttcctggcggtggccaacggcaagcaggtcgccctgctctgccccaccaccctgctggcc
gagcagcacgcgcagaccttctccgaccgcttcgccgactggccggtgcgggtggtggag
ctgtcgcgcttccgctcggccaaggaagtatcggccgccatcgagggcatcaacgacggc
cgcgtcgacatcgtcatcggcacccacaagatcctgtccaaggacgtgaagttcaagcgc
ctcgggctggtcatcatcgacgaggaacaccgcttcggcgtgcgccagaaggaagcgctc
aaggcgctgcgcgccgaggtcgacgtgctcaccctgaccgccacgccgatcccgcgcacg
ctcggcatgtcgctcgaaggcatccgcgacttctcggtcatcgccaccgcgccgcaaaag
cgcctggcgatcaagaccttcgtgcggcgcgaggacggcagcacgctgcgcgaggcgctg
ctgcgcgagctcaagcgcggcggccagtgttacttcctgcacaacgaggtcgagaccatc
cacaaccgccgcgcccgcctcgaagagctggtgcccgaggcccgcatcgcggtggcccat
ggccagatgcccgagcgcgacctggaacaggtgatgaagggcttctaccagcagcgctac
aacgtgctgctgtgcaccaccatcatcgagaccggcatcgacgtgcccagcgccaacacc
atcgtgatccaccgcgccgaccgcttcggcctggcgcagctgcaccagctgcgcggccgc
gtcggccgctcgcaccaccaggcctacgcctacctgctgacgccgggcgaggacgccatc
accagcaacgccaagaagcggctggaagcgatccaggccatggaggaactgggctcgggc
ttctacctggccatgcacgacctggagatccgcggcaccggcgaggtgctgggcgattcg
cagtccggcaacatccaggaagtcggcttctcgatgtacaacgagatgctcaacgaagcg
gtgcgcgccctgcgcgccggcgaagagccggacctggacgcacccttcaacctggcctgc
gaggttaacctgcacgcgccggcgctgctgccgtccgactactgcgccgacgtgcacgcg
cgcctgagcgtctacaagcgcctggcccacgccgccgacgaggacgacctgatccagatc
caggaagaactgatcgaccgcttcggcaagctgccggaagcggcgcagacgctgctgacc
acgcaccgcctgcgcctggccgcgcaaccgctgggcatcgtcaagatcgacgccagcgaa
acccaggcgctgctgcagttcggccccaagaccagcgtcgatccggcgaaaatcatcgag
ctggtgcagcggcaacgccacatcaaactcgccggacaggataaattgcgggttgagatc
aaggccgcgcagatcccggctcgcgccgatgccgtgcgcgccgtgctgcgcgccttgaag
taa
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