Achromobacter xylosoxidans NBRC 15126 = ATCC 27061: AX27061_4222
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Entry
AX27061_4222 CDS
T02964
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
axn
Achromobacter xylosoxidans NBRC 15126 = ATCC 27061
Pathway
axn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
axn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AX27061_4222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
axn03400
]
AX27061_4222
Enzymes [BR:
axn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AX27061_4222
DNA repair and recombination proteins [BR:
axn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AX27061_4222
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AHC48681
LinkDB
All DBs
Position
complement(4679787..4682411)
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AA seq
874 aa
AA seq
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MADTLAKYRAKRNFNVTSEPAEGGQANEAARAFVIQKHWASRLHYDFRLELDGAMKSWAV
PKGPSYDPSVKRMAVQVEDHPIAYNRFEGEIPKGQYGAGKVIIWDRGTWAPVGDPADGYR
RGHLKFDLHGVKMRGRWALIRMKGRESEKQPPWLLVKDRDEHARAESEFSVVDEQPDSVA
TPPRTGARAVPAAAPGARPDAAASPSASPSSSAPPSSDAGAAGLPGEAAPLPELLKPQLA
TLVEGVPRQAGDDWIYEMKFDGYRLLARLRDGQVRLYTRNGHDWGPKLPHLARALQRLPL
PDAWIDGEIVMLADNGAPSFQALQNAFDGERTDGILFYAFDLPYVTGRDLRQEPLRVRRA
VLARVMEAAGGDPLRFSEAFDAAPADLVASACKMGLEGIIAKRLSAPYVSRRSDSWVKLK
CARRQEFVIAGYTDPKGARVGLGALLLAYHDEDGGLVYAGKVGTGFDDMGLAALQRRLSA
LETERPAVKAAGIGRGVHWVRPELVAEVSFGEWTASGHVRHPVFRGLRTDKPARAITREA
AMGADTMQSDNAAGKTGNAKTGKAKPGNARTGKAKAGKAKPGAGKLTHPERIIDPSTGLT
KLDLARYDGLVAPLLLRHLKDRPVSFLRAPSGLKGEFFFQKHLEAPMPGVRPLPQELDPD
HPPLMEVPTPQAIMSAAQMNVVEFHTWNAVKSAIDKPDRMLFDLDPGEGVAWPSMQQAAR
LVHVMLREIGLRSWLKTSGGKGLHVVVPLRRQYDWDTVKAFSQAIVQHLARTLPQVFVAK
SGPKNRVGRIFADYLRNGFGATTVAAWSARARPGMGVSVPLAWDELDEVRASDQWTIANI
HTRLDVGDAPWDDYTPQALGAAMKAMDFKPDSGG
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atggccgataccctggcgaaataccgcgccaagcgcaatttcaatgtgacgtcggagccg
gccgaaggcggccaggccaacgaggcggcgcgcgccttcgtgatccagaagcactgggcc
agccgcctgcactacgacttccggctggaactggatggcgccatgaagagctgggccgtg
cccaaggggcccagctacgacccgtcggtcaagcgcatggccgtgcaggtggaggaccac
ccgatcgcctacaaccgtttcgagggcgagatccccaagggccagtacggcgccggcaag
gtgatcatctgggaccggggcacctgggcgccggtgggcgatccggccgacggctaccgg
cgcggccatctcaagttcgacctgcatggcgtcaagatgcgcggacgctgggcgctgatc
cgcatgaagggccgcgagtcggaaaagcagccgccctggctgctggtcaaggaccgcgac
gaacacgcccgcgccgaaagcgaattcagcgtggtggacgagcagcccgacagcgtggcc
acgccgccgcggacgggcgcgcgggccgtgcccgccgcggcgcccggggcgcggccggat
gcggccgcatcgccgtcagcatcgccgtcatcgtccgcgccgccgtcgtcggacgccggg
gcagcgggcctgccgggcgaggcggcgcccttgccggagctgctcaagccgcaattggcc
acgctggtggaaggcgtgccgcgccaggccggcgatgactggatctacgagatgaagttc
gacggctaccgtctgctggcgcggctgcgggacggccaggtgcgcctgtacacgcgcaac
ggccacgactgggggccgaagctgccgcacctggcgcgggcgctgcagcgcctgccgctg
cccgacgcctggatcgacggcgagatcgtgatgctggccgacaacggcgcgcccagcttc
caggcgctgcagaatgccttcgacggcgaacgcaccgacggcatcctgttctacgcgttc
gacctgccctacgtcaccggccgcgacctgcgccaggagccgctgcgcgtgcgccgcgcg
gtgctggcgcgggtgatggaggccgccggcggcgatccgctgcgctttagcgaagccttc
gacgcggcgccggcggacctggtggcctcggcctgcaagatggggctggagggcatcatc
gccaagcgcctgtccgcgccctacgtatcgcgccgcagcgacagctgggtcaagctcaag
tgcgcccgccggcaggaattcgtcattgccggctataccgatcccaagggcgcgcgggtg
gggctgggcgcgctgctgctggcgtaccacgacgaggacggcgggctggtctacgccggc
aaggtcggcaccggctttgacgacatgggcctggcggcgctgcaacgccgcctgagcgcc
ctggaaacggagcggcccgccgtcaaggcggccggcattggccgcggcgtccattgggtg
cgtcccgagctggtggcggaagtgtcgttcggcgaatggaccgcttcggggcatgtgcgc
caccccgtgttccgcggcttgcgcaccgacaaaccggcgcgcgcgatcaccagggaggcg
gcgatgggggccgatacgatgcagtccgacaatgcggccggcaagaccggcaacgccaag
acaggcaaagccaagcccggcaacgccaggactggcaaagccaaggcgggcaaggccaag
ccaggcgccggcaagctgacccacccggaacgcatcatcgatccgtccacggggctgacc
aagctggacctggcgcgttacgacgggctggtggcgccgctgctgctgcggcacctgaag
gaccggcccgtttcctttctgcgcgccccgtccggcctgaagggcgagttctttttccag
aagcacctggaggcgccgatgccgggcgtgcggccgctgccgcaggaactggacccggat
catccgcccttgatggaggtcccgacgccgcaggcgatcatgtcggcggcgcagatgaac
gtggtcgagttccacacctggaacgcggtgaaaagcgcgatcgacaagcccgaccgcatg
ctgttcgacctggacccgggcgagggcgtggcctggccgtcgatgcagcaggcggcgcgg
ctggtccacgtgatgctgcgcgaaatcggtttgcgcagctggctcaagaccagcggcggc
aagggcctgcacgtggtggtgccgctgcgtcggcaatacgactgggacaccgtcaaggcg
ttctcgcaggccatcgtgcaacacctggcgcgcacgctgccgcaggtgttcgtggccaag
agcgggccgaagaaccgcgtcggcaggatcttcgccgactacctgcgcaacggcttcggc
gccacgacggtggcagcctggtcggcgcgcgcgcggccgggcatgggcgtgtcggtgccg
ctggcctgggacgagctggacgaggtccgggccagcgaccagtggaccatcgccaacatc
cacacgcgcctggatgtcggcgacgcgccctgggacgactacacgccgcaggcgctgggc
gcagccatgaaggcgatggacttcaagccggattcgggcgggtag
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