Achromobacter xylosoxidans NH44784-1996: NH44784_059851
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Entry
NH44784_059851 CDS
T02785
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
axo
Achromobacter xylosoxidans NH44784-1996
Pathway
axo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
axo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NH44784_059851
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
axo03400
]
NH44784_059851
Enzymes [BR:
axo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NH44784_059851
DNA repair and recombination proteins [BR:
axo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NH44784_059851
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CCH09926
LinkDB
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Position
complement(6435694..6438306)
Genome browser
AA seq
870 aa
AA seq
DB search
MADTLAKYRAKRNFNVTSEPAEGGQANEAARAFVIQKHWASRLHYDFRLELDGAMKSWAV
PKGPSYDPSVKRMAVQVEDHPIAYNRFEGEIPKGQYGAGKVIIWDRGTWAPVGDPADGYR
RGHLKFDLHGVKMRGRWALIRMKGRESEKQPPWLLVKDRDEHARAESEFSVVDEQPDSVA
TPPRTGARAVPAAAPGARPDAAASPSSSAPPSSDAGAAGLPGEAAPLPELLKPQLATLVE
GVPRQAGDDWIYEMKFDGYRLLARLRDGQVRLYTRNGHDWGPKLPHLVRALQRLPLPDAW
IDGEIVMLADNGAPSFQALQNAFDGERTDGILFYAFDLPYVTGRDLRQEPLRVRRAVLAR
VMEAAGGDPLRFSEAFDAAPADLVASACKMGLEGIIAKRLSAPYVSRRSDSWVKLKCARR
QEFVIAGYTDPKGARVGLGALLLAYHDEDGGLVYAGKVGTGFDDMGLAALQRRLSALETE
RPAVKAAGVGRGVHWVRPELVAEVSFGEWTASGHVRHPVFRGLRTDKPARAITREAAMGA
DTMQSDNAAGKTGKAKPGKAKPGNAQTGKAQAGKAQPGAGKLTHPERIIDPSTGLTKLDL
ARYDGLVAPLLLRHLKDRPVSFLRAPSGLKGEFFFQKHLEAPMPGVRPLPQELDPDHPPL
MEVPTPQAIMSAAQMNVVEFHTWNAVKSAIDKPDRMLFDLDPGEGVAWPSMQQAARLVHV
MLREIGLRSWLKTSGGKGLHVVVPLRRQYDWDTVKAFSQAIVQHLARTLPQVFVAKSGPK
NRVGRIFADYLRNGFGATTVAAWSARARPGMGVSVPLAWDELDEVRASDQWTIANIHTRL
DVGDAPWDDYTPQALGAAMKAMDFKPDSGG
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atggccgataccctggcgaaataccgcgccaagcgcaatttcaatgtgacgtcggagccg
gccgaaggcggccaggccaacgaggcggcgcgcgccttcgtgatccagaagcactgggcc
agccgcctgcactacgacttccggctggaactggatggcgccatgaagagctgggccgtg
cccaaggggcccagctacgacccgtcggtcaagcgcatggccgtgcaggtggaggaccat
cccattgcctacaaccgtttcgagggcgagatccccaagggccagtacggcgccggcaag
gtgatcatctgggaccggggcacctgggcgccggtgggcgatccggccgacggctaccgg
cgcggccatctcaagttcgacctgcatggcgtcaagatgcgcggacgctgggcgctgatc
cgcatgaagggccgcgagtcggaaaagcagccgccctggctgctggtcaaggaccgcgac
gaacacgcccgcgccgaaagcgaattcagcgtggtggacgagcagcccgacagcgtggcc
acgccgccgcggacgggcgcgcgggccgtgcccgccgcggcgcccggggcgcggccggat
gcggccgcatcgccgtcatcgtccgcgccgccgtcgtcggatgccggggcagcgggcctg
ccgggtgaggcggcgcccttgccggagctgctcaagccgcaattggccacgctggtggaa
ggcgtgccgcgccaggccggcgatgactggatctacgagatgaagttcgacggctaccgt
ctgctggcgcggctgcgggacggccaggtgcgcctgtacacgcgcaacggccacgactgg
gggccgaagctgccgcacctggtgcgggcgctgcagcgcctgccgctgcccgacgcctgg
atcgacggcgagatcgtgatgctggccgacaacggcgcgcccagcttccaggcgctgcag
aatgccttcgacggcgaacgcaccgacggcatcctgttctacgcgttcgacctgccctac
gtcaccggccgcgacctgcgccaggagccgctgcgcgtgcgccgcgcggtgctggcgcgg
gtgatggaggccgccggcggcgatccgctgcgcttcagcgaagccttcgacgcggcaccg
gcggacctggtggcctcggcctgcaagatggggctggagggaatcatcgccaagcgcctg
tcggcgccctacgtatcgcgccgcagcgacagctgggtcaagctcaagtgcgcccgccgg
caggaattcgtcattgccggctataccgatcccaagggcgcgcgggtggggctgggcgcg
ctgctgctggcgtaccacgacgaggacggcgggctggtctacgccggcaaggtcggcacc
ggctttgacgacatgggcctggcggcgctgcaacgccgcctgagcgccctggaaacggag
cggcccgccgtcaaggcggccggcgttggccgcggcgtccattgggtgcggcccgagctg
gtggcggaagtgtcgttcggcgaatggaccgcttcggggcatgtgcgccacccggtcttc
cgcggcttgcgcaccgacaagccggcgcgcgcgatcaccagggaggcggcgatgggggcc
gatacgatgcagtccgacaatgcggccggcaagaccggcaaagccaagccaggcaaagcc
aagcccggcaacgcccagactggcaaagcccaggcgggcaaggcccagccaggcgccggc
aagctgacccacccggaacgcatcatcgatccgtccacggggctgaccaagctggacctg
gcgcgctacgacgggctggtggcgccgctgctgctgcggcacctgaaggaccggcccgtt
tcctttctgcgcgccccgtccggcctgaagggcgagttctttttccagaagcacctggag
gcgccgatgccgggcgtgcggccgctgccgcaggaactggacccggatcatccgcccttg
atggaggtgccgacgccgcaggcgatcatgtcggcggcgcagatgaacgtggtcgagttt
cacacctggaacgcggtgaaaagcgcgatcgacaagcccgaccgcatgctgttcgacctg
gacccgggcgaaggggtggcctggccgtcgatgcagcaggcggcgcggctggtccacgtg
atgctgcgcgaaatcggtttgcgaagctggctcaagaccagcggcggcaagggcctgcac
gtggtggtgccgctgcgccggcagtacgactgggacacggtcaaggcgttctcgcaggcc
atcgtgcaacacctggcgcgcacgctgccgcaggtgttcgtggccaagagcgggccgaag
aaccgcgtcggcaggatcttcgccgactacctgcgcaacggcttcggcgccacgacggtg
gcagcctggtcggcgcgcgcgcggccgggcatgggggtgtcggtgccgctggcctgggac
gagctggacgaggtccgggccagcgaccagtggaccatcgccaacatccacacgcgcctg
gatgtcggcgacgcgccctgggacgactacacgccgcaggcgctgggcgcagccatgaag
gcaatggatttcaagccggattcgggcgggtag
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