Achromobacter xylosoxidans NCTC10807: ERS451415_04244
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Entry
ERS451415_04244 CDS
T04522
Name
(GenBank) Putative DNA ligase-like protein Rv0938/MT0965
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
axx
Achromobacter xylosoxidans NCTC10807
Pathway
axx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
axx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ERS451415_04244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
axx03400
]
ERS451415_04244
Enzymes [BR:
axx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ERS451415_04244
DNA repair and recombination proteins [BR:
axx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ERS451415_04244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CKH87769
LinkDB
All DBs
Position
1:complement(4673995..4676619)
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AA seq
874 aa
AA seq
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MADTLAKYRAKRNFNVTSEPAEGGQANEAARAFVIQKHWASRLHYDFRLELDGAMKSWAV
PKGPSYDPSVKRMAVQVEDHPIAYNRFEGEIPKGQYGAGKVIIWDRGTWAPVGDPADGYR
RGHLKFDLHGVKMRGRWALIRMKGRESEKQPPWLLVKDRDEHARAESEFSVVDEQPDSVA
TPPRTGARAVPAAAPGARPDAAASPSASPSSSAPPSSDAGAAGLPGEAAPLPELLKPQLA
TLVEGVPRQAGDDWIYEMKFDGYRLLARLRDGQVRLYTRNGHDWGPKLPHLARALQRLPL
PDAWIDGEIVMLADNGAPSFQALQNAFDGERTDGILFYAFDLPYVTGRDLRQEPLRVRRA
VLARVMEAAGGDPLRFSEAFDAAPADLVASACKMGLEGIIAKRLSAPYVSRRSDSWVKLK
CARRQEFVIAGYTDPKGARVGLGALLLAYHDEDGGLVYAGKVGTGFDDMGLAALQRRLSA
LETERPAVKAAGIGRGVHWVRPELVAEVSFGEWTASGHVRHPVFRGLRTDKPARAITREA
AMGADTMQSDNAAGKTGNAKTGKAKPGNARTGKAKAGKAKPGAGKLTHPERIIDPSTGLT
KLDLARYDGLVAPLLLRHLKDRPVSFLRAPSGLKGEFFFQKHLEAPMPGVRPLPQELDPD
HPPLMEVPTPQAIMSAAQMNVVEFHTWNAVKSAIDKPDRMLFDLDPGEGVAWPSMQQAAR
LVHVMLREIGLRSWLKTSGGKGLHVVVPLRRQYDWDTVKAFSQAIVQHLARTLPQVFVAK
SGPKNRVGRIFADYLRNGFGATTVAAWSARARPGMGVSVPLAWDELDEVRASDQWTIANI
HTRLDVGDAPWDDYTPQALGAAMKAMDFKPDSGG
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atggccgataccctggcgaaataccgcgccaagcgcaatttcaatgtgacgtcggagccg
gccgaaggcggccaggccaacgaggcggcgcgcgccttcgtgatccagaagcactgggcc
agccgcctgcactacgacttccggctggaactggatggcgccatgaagagctgggccgtg
cccaaggggcccagctacgacccgtcggtcaagcgcatggccgtgcaggtggaggaccac
ccgatcgcctacaaccgtttcgagggcgagatccccaagggccagtacggcgccggcaag
gtgatcatctgggaccggggcacctgggcgccggtgggcgatccggccgacggctaccgg
cgcggccatctcaagttcgacctgcatggcgtcaagatgcgcggacgctgggcgctgatc
cgcatgaagggccgcgagtcggaaaagcagccgccctggctgctggtcaaggaccgcgac
gaacacgcccgcgccgaaagcgaattcagcgtggtggacgagcagcccgacagcgtggcc
acgccgccgcggacgggcgcgcgggccgtgcccgccgcggcgcccggggcgcggccggat
gcggccgcatcgccgtcagcatcgccgtcatcgtccgcgccgccgtcgtcggacgccggg
gcagcgggcctgccgggcgaggcggcgcccttgccggagctgctcaagccgcaattggcc
acgctggtggaaggcgtgccgcgccaggccggcgatgactggatctacgagatgaagttc
gacggctaccgtctgctggcgcggctgcgggacggccaggtgcgcctgtacacgcgcaac
ggccacgactgggggccgaagctgccgcacctggcgcgggcgctgcagcgcctgccgctg
cccgacgcctggatcgacggcgagatcgtgatgctggccgacaacggcgcgcccagcttc
caggcgctgcagaatgccttcgacggcgaacgcaccgacggcatcctgttctacgcgttc
gacctgccctacgtcaccggccgcgacctgcgccaggagccgctgcgcgtgcgccgcgcg
gtgctggcgcgggtgatggaggccgccggcggcgatccgctgcgctttagcgaagccttc
gacgcggcgccggcggacctggtggcctcggcctgcaagatggggctggagggcatcatc
gccaagcgcctgtccgcgccctacgtatcgcgccgcagcgacagctgggtcaagctcaag
tgcgcccgccggcaggaattcgtcattgccggctataccgatcccaagggcgcgcgggtg
gggctgggcgcgctgctgctggcgtaccacgacgaggacggcgggctggtctacgccggc
aaggtcggcaccggctttgacgacatgggcctggcggcgctgcaacgccgcctgagcgcc
ctggaaacggagcggcccgccgtcaaggcggccggcattggccgcggcgtccattgggtg
cgtcccgagctggtggcggaagtgtcgttcggcgaatggaccgcttcggggcatgtgcgc
caccccgtgttccgcggcttgcgcaccgacaaaccggcgcgcgcgatcaccagggaggcg
gcgatgggggccgatacgatgcagtccgacaatgcggccggcaagaccggcaacgccaag
acaggcaaagccaagcccggcaacgccaggactggcaaagccaaggcgggcaaggccaag
ccaggcgccggcaagctgacccacccggaacgcatcatcgatccgtccacggggctgacc
aagctggacctggcgcgttacgacgggctggtggcgccgctgctgctgcggcacctgaag
gaccggcccgtttcctttctgcgcgccccgtccggcctgaagggcgagttctttttccag
aagcacctggaggcgccgatgccgggcgtgcggccgctgccgcaggaactggacccggat
catccgcccttgatggaggtcccgacgccgcaggcgatcatgtcggcggcgcagatgaac
gtggtcgagttccacacctggaacgcggtgaaaagcgcgatcgacaagcccgaccgcatg
ctgttcgacctggacccgggcgagggcgtggcctggccgtcgatgcagcaggcggcgcgg
ctggtccacgtgatgctgcgcgaaatcggtttgcgcagctggctcaagaccagcggcggc
aagggcctgcacgtggtggtgccgctgcgtcggcaatacgactgggacaccgtcaaggcg
ttctcgcaggccatcgtgcaacacctggcgcgcacgctgccgcaggtgttcgtggccaag
agcgggccgaagaaccgcgtcggcaggatcttcgccgactacctgcgcaacggcttcggc
gccacgacggtggcagcctggtcggcgcgcgcgcggccgggcatgggcgtgtcggtgccg
ctggcctgggacgagctggacgaggtccgggccagcgaccagtggaccatcgccaacatc
cacacgcgcctggatgtcggcgacgcgccctgggacgactacacgccgcaggcgctgggc
gcagccatgaaggcgatggacttcaagccggattcgggcgggtag
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