Achromobacter xylosoxidans A8: AXYL_00438
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Entry
AXYL_00438 CDS
T01341
Symbol
ligD1
Name
(GenBank) DNA ligase D 1
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
axy
Achromobacter xylosoxidans A8
Pathway
axy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
axy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AXYL_00438 (ligD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
axy03400
]
AXYL_00438 (ligD1)
Enzymes [BR:
axy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AXYL_00438 (ligD1)
DNA repair and recombination proteins [BR:
axy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AXYL_00438 (ligD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ADP13796
UniProt:
E3HUH3
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All DBs
Position
462917..465445
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AA seq
842 aa
AA seq
DB search
MADSLKKYREKRNFAVTPEPPEGGESGDAGLVFVIQKHWASHLHYDFRLELDGAMKSWAV
PKGPSFDPSVKRMAVQVEDHPIAYNQFEGTIPKGQYGAGKVIIWDEGRWTPIGDPRKGYK
AGHLKFTLEGVKLRGRWALIRMKGKESDRQPPWLLIKESDEYAREDQDFSVVDEMPDSVV
PLRAKKKAEAARSKPQARAAKAVEAVAALPGKAAVLPASLKPQLATLVDGVPRGADDWSY
EMKFDGYRILARLEDGSVKLYTRNGHDWTARMPRLAQELAALEIANAWIDGEIVVLTREG
VPSFQALQNAFDAAGTADIVFYAFDLPYVAGRDLRDEPLSLRRDLLRQVIARCKGKHVKF
SEAFDKPPADLVASACKLGLEGIIGKRLSAPYVSRRTDDWIKLKCTQRQEFVIVGYTEPK
GSRKGFGALLLAVHEPDGALRYAGNVGTGFDDRTLLDLHRKLASIEQKTSALTQGKPRAL
KQVHWVQPTLIGEVSFGEWTGDGHVRHSTFRGLRTDKPPKKITREVAMPAEKLSPRNSTA
KAKAGGAAKPSKGMKLSNPDRVIDPSSGATKLDLARYYGLVAPLMMEHLRGRPVSFVRAP
AGIQGEHFFQRHSESPIPGVTALPERLYPGHPSLMEISNVAAILAAAQLNVVEFHTWNAL
KTSIGKPDRMLFDLDPGEGVDWPTVQQGAELVRVLLQELGLRGWLKTSGGKGLHVVVPIR
KQYGWDAVKDFSEAMVRHLAQTLPKLFVAKSGPKNRVGKIFADYLRNGFGATTVAAWSAR
ARPGLGVSVPVRWDELDGLKGSAQWTIANIHTRLDAGNEPWDDYAPQAIGRAMKQLGVEL
RS
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggcggacagtctcaagaaataccgcgagaagcgcaatttcgccgtcacgcccgaaccg
cccgagggcggcgagtccggcgacgcaggcctggtgttcgtgattcagaagcactgggcc
agccatctgcactatgacttccgcctggagctggacggtgcgatgaagagttgggcggtg
ccgaaagggccgtcattcgatccctccgtcaagcgcatggccgtgcaggtcgaagaccat
cccatcgcctacaaccagttcgaaggcaccatccccaaggggcagtatggggccggcaag
gtgatcatctgggacgaggggcgctggactccaataggcgatccccggaagggctacaag
gcgggccatctgaaattcacgctcgagggcgtgaaactgcgcgggcgctgggcgctgatc
cgcatgaagggcaaagaaagtgatcgacagccgccctggttgttgatcaaggagagcgac
gaatacgcgcgggaggaccaggacttcagcgtcgtggatgagatgccggacagcgtggtg
ccgctgagggcgaagaagaaggcggaggctgcgcgcagcaagccgcaagctcgcgctgcc
aaggcggttgaagctgtcgcggccttgcccggcaaggccgctgtgctgcccgcgtcgctc
aaacctcaactggccaccctggttgacggtgtgccgcggggcgcggacgactggtcctat
gaaatgaagttcgacggctaccggatcctggccaggctggaggacggaagcgtgaagctg
tacacgcgcaacggccacgactggacggccaggatgccgcgcctggcccaggaactggcg
gcattggagattgccaatgcctggatcgacggagagatcgtggtgctgacgcgcgaaggc
gtgcccagctttcaggccttgcagaacgccttcgatgccgcgggtaccgcggatatcgtg
ttctacgcctttgacctgccctatgtggcggggcgcgatctgcgcgacgagccgctcagc
ttgcgccgggatctgctgcggcaggtgattgccaggtgcaagggcaagcatgtgaagttc
agcgaggcctttgacaagccgccagcggacctggtcgcctcggcctgcaagctgggcctg
gaaggaatcatcggcaagcgcctgtccgcgccctatgtgtcgcgccgcacggacgactgg
atcaagctcaagtgcacccagcggcaggagttcgtcatcgtgggctataccgaacccaag
ggcagccgcaagggctttggcgcgctgctgctggcggtgcatgagcctgatggagccctg
cgctacgccggcaacgtaggcactggtttcgacgacaggactttgctcgacctgcaccgc
aaactggccagcatcgagcagaaaaccagcgccctgacccaaggcaagccgcgcgccctc
aagcaggtccattgggtccagcccaccttgatcggagaggtctctttcggggagtggacc
ggcgacggccatgtacgccattcgactttccgggggttgcgtaccgacaaaccaccgaag
aagatcactcgcgaggtcgccatgccagccgaaaagctctccccgcgcaacagcactgcc
aaggccaaggcagggggcgcagcaaaaccctcgaaaggaatgaagctatcgaatcccgac
cgcgtgatagatccatcctccggggcgaccaagctagacctggcccgctactacgggctt
gtggcgcccctgatgatggagcacctgcgcggccggccggtctcctttgtccgggcgccc
gcggggatccagggcgagcatttcttccagcggcattcggaatcccctatcccgggggtg
accgcgctgcccgaacgtctctatccggggcacccctccctgatggaaatttcgaacgta
gcggcgatactcgcggctgcccagctgaacgtggtggagttccacacctggaacgcgctc
aagacctcgatcggcaagccggatcggatgctgttcgacctggaccccggggaaggggtg
gattggcccacggtccagcagggcgcggagttggtgcgcgtgctgctgcaggaacttggc
ctgcgcggctggctgaagaccagcggcggcaagggcctgcatgtggtcgttcccatccgc
aagcaatacggctgggatgccgtgaaggacttttccgaagccatggtgcgccatctggcg
caaaccctgccaaagctgttcgtcgccaaaagcggccccaagaatcgcgtgggcaagata
ttcgccgattatctgcgcaacggcttcggcgctacgacggtggcggcctggtcggcgcgc
gcccggcccggcctgggcgtgtccgttcccgtacgctgggatgaactggacgggctgaaa
gggtcggcgcaatggaccatcgccaatatccacacccgcctggacgcgggcaacgagcct
tgggacgactacgcgccgcaggcgatcggccgggccatgaagcagctcggggtcgagctg
cgatcttga
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