Azoarcus sp. KH32C: AZKH_2968
Help
Entry
AZKH_2968 CDS
T02502
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aza
Azoarcus sp. KH32C
Pathway
aza03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aza00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AZKH_2968 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aza03400
]
AZKH_2968 (ligD)
Enzymes [BR:
aza01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AZKH_2968 (ligD)
DNA repair and recombination proteins [BR:
aza03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AZKH_2968 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BAL25267
UniProt:
H0PVB9
LinkDB
All DBs
Position
complement(3333659..3336214)
Genome browser
AA seq
851 aa
AA seq
DB search
MLKSWAVPKGPSLDPSDKRLAVETEDHPYDYASFEGVIPPGHYGAGEVIVWDCGVYSPDE
GQEYWFHDRDEAQRRIREGLVKGKLSFTLRGEKLKGSFALVRSGEPRNWFLIKHKDRFAG
PADLMARNRSVLSGLAVEELKFLPAHRVPAATLAPTGRNEAMPAKLSPMLAETGEAPFSD
PDWLWEPKLDGYRVLAFVAGEEVKLQSRRGLDLTVTFPRLSDELRGQAADMILDGEVVAF
DASGRPSFNALQNRFQLKAERDIAAADRSTPVVFYCFDLLHFAGIDLRGAPYRDRRRYLA
QCLLPSPLLQLVHVAEDGEALQRAALASGFEGIIGKRKDSRYEAGRRSASWLKIKATQSG
EFVVGGYTRGKGSRGPLGALLLGYWDEGALRYASHVGSGFDAATLERVRARLEGLRTDVC
PFVEKPELNGPTTWVRPELVVEVQFQEWTADGSLRVPIFLRMRDDIDPKSVRRSKHGAVP
HKPPASGSASAEGGNSEIEDILQQLENSKTAFSLAVGPHRIRLTHLDRVYWPEDQALKQP
AVTKRDLLRYFAQVSPFLLPHLADRPLTLIRMPDGIFGQRFFQKRWEQERPEFLDMLDVY
SGHQDENHEVLICNNLATLLWLAQYGTIELHVWHSRARLGPDAAVQGTDYAGSLATLEAS
VLNYPDYVVFDLDPYIYSGKEAPGDEPELNTVAFEKGKEVAFWLRELLQSMALDAIVKTS
GKTGLHIFVPIRRTLDFDAARKVCELVGRHLLRLHPRDITMEWSVRSRTGKIFLDYNMNV
RGKTLNVAYSPRGVPGAPVSMPLTWDELASAHPLDFRITNVAQRLAQTGDRWHDALKRKL
SLERALSGAKT
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
gtgctgaaatcctgggcagttcccaagggaccgtcgctcgatccttcggacaagcggctg
gcggtcgagaccgaggatcacccttatgactacgcctccttcgagggggtcatcccgccc
ggtcattacggcgccggggaggtgattgtttgggactgcggtgtctattcgcccgacgag
gggcaggagtactggttccatgatcgggacgaagcgcagcgccggatccgtgaggggctt
gtgaagggcaagctcagctttacgctgcgaggggagaagctgaagggctcttttgccctt
gtgcgtagcggggagccgcgtaactggttcctgatcaagcacaaggaccgcttcgcggga
ccggcggacctcatggcgaggaaccgttcggtgcttagcgggttggcggtcgaggagctt
aagttcctgccggcccatcgggtgcccgcggcgacgctggcgcctaccggccggaacgag
gcgatgcccgcgaagctgtcgcccatgcttgcggagactggcgaggcgccgtttagcgat
cccgactggctgtgggagcccaagctcgatggctatcgcgtgctggccttcgtcgccggg
gaggaggtgaaactgcaatcgcgccggggcctcgacctgaccgtcactttccctcggctg
agcgacgagctgcgtggccaggcggcggacatgatcctggacggcgaggtcgtggccttc
gatgcgagcggccggccctcgttcaacgcgctgcagaatcgctttcagctgaaagccgag
cgggatattgccgcggccgatcggagcacaccggtggtcttttactgcttcgatctgctg
cacttcgccggcatcgatctgcggggagcgccttatcgcgaccgtcgccgctacctcgcg
caatgcctgctgccttcgcccctgctgcaactcgtccatgtcgcggaggatggggaggcg
ctgcagcgggctgcgctcgccagcggcttcgaggggatcatcggcaagcgcaaggacagc
cggtacgaggccgggcggcgctcggcatcctggctcaagatcaaggccactcaaagcggg
gagttcgtggttggcggctacacccgcggaaagggctcgcggggcccgctcggtgcgctg
ctgctcgggtactgggatgagggggcgctacgttatgcctcgcatgtcgggtccggcttc
gatgccgcaactctggagcgggtcagggcgcggctggagggcttacgaacggacgtgtgc
ccgttcgtggagaagccggagctgaatgggccgacgacttgggttagaccggaattggtg
gtcgaggtgcagttccaggaatggactgcggacggcagcctgcgtgtgccgatctttctc
cgtatgcgcgacgatatcgatcccaagtcggtacgccgtagcaagcacggcgcggtgccg
cataagccgcccgccagcgggtcggcgagcgcggagggtgggaacagcgagatcgaggac
atcctgcagcaactggagaacagcaagacagccttctcgctcgcggtcggtccgcaccgg
attcggctgacgcatctcgatcgcgtctactggccggaggatcaggccctcaagcagccg
gcggtgaccaagcgcgacctgctgcgctacttcgcgcaagtctcgcccttcctcctgcct
cacctcgcggatcgcccgctgacgctgattcgcatgcccgacggcatcttcggacagcgg
tttttccagaagcgctgggagcaggagcggccggaattcttggacatgctcgacgtgtat
tcggggcatcaggacgagaatcatgaagtgctcatctgcaacaacctggccacgctgctg
tggctggcgcagtatgggaccatcgagttgcatgtctggcattcgcgtgcgcgtctcggg
ccggatgcggcggtccagggaaccgactacgccggctcgctcgccaccctcgaggcgtcg
gtgctgaactaccccgactacgtggtgttcgacctcgatccgtacatctattccggcaag
gaggcgccgggagacgagccggaactcaatacggtcgccttcgagaagggcaaggaggtg
gccttttggctgcgcgagttgctgcagagtatggcgctggacgccatcgtcaagacctcg
ggcaagaccgggctacacatcttcgtgcccatccggcgcaccctcgatttcgatgccgcg
cgcaaggtgtgcgagctcgtcgggcggcacctgctgcgcctgcatccgcgggacatcacg
atggagtggagtgtgcggtcgcggaccggcaagatcttccttgactacaatatgaacgtc
cgcggcaagacgctgaacgtcgcctactcgccccgaggggtgcccggcgcaccggtgtcg
atgccgcttacttgggacgagctggccagcgcgcacccgctcgatttcaggatcaccaac
gtcgcgcagcgcctggcacagacgggtgatcgctggcacgacgccctgaagcgcaagctg
agcctggaacgggctttgtccggcgccaaaacctga
DBGET
integrated database retrieval system
