Azorhizobium caulinodans: AZC_1006
Help
Entry
AZC_1006 CDS
T00609
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
azc
Azorhizobium caulinodans
Pathway
azc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
azc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AZC_1006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
azc03400
]
AZC_1006
Enzymes [BR:
azc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AZC_1006
DNA repair and recombination proteins [BR:
azc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AZC_1006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BAF87004
RhizoBase:
AZC_1006
UniProt:
A8HV36
LinkDB
All DBs
Position
1126636..1129338
Genome browser
AA seq
900 aa
AA seq
DB search
MGLSTYRAKRDFTVTPEPDGGAKGKARAAASASAGAYVIQKHAARRLHYDLRLEMDGVLK
SWAVTRGPSLVPGEKRLAVHVEDHPLAYGGFEGTIPEGQYGAGKVIVWDRGSWTPVGDPH
KGYKKGHLEFALDGEKLHGRWHLVRMSPHPGDKKENWLLIKVEDEAARPEGAPEITDEAP
LSVVSGRDVEEVGAPSAAKSPKLSTAKTSRPKAAARDAKASEEAETTASGAERGARAVSA
PAKAKKTTAARVNGRSTRATAWDLPKGAKRAPLPDFLPPALATLARQAPKGRRYVHEIKF
DGYRIAARLEDGEVRLLTRTGLDWSARFGTAIREAAAALPVSDAMLDGEVVVEGGNGASD
FSALQADLSEGRTDRFVYYAFDLLHLDGHDLTGAPLAERKALLEQLLTRAEGSGEGVLRY
SGHFEDDGAMVLQHACRLSLEGVVSKLKDAPYHSGRSRDWIKSKCSERQEFVIGGFVPST
TARKAIGSLVLGVYEGKRLVHVGRVGTGFSNKMASDLHTLLAPEAVEESPFSARLTADEA
RGVTFVAPKRVAEVEFRAWTGDGHLRHAAFRGLRDDKAAADVVREAASQPAETPKTPPKR
RVRLTHPDRIYWPDAGVTKEGLADYYAEVWPRIAPFIVGRPLALVRCPEGIEGQHFFQKH
PWKGADKALKEVHDPKAPDEPPYLAVETLDGLMALVQGAALEIHPFGAPLSDWERPDLLT
MDLDPGEGVPWSAVIAAAHEVKARLETAGLAAFVKTSGGKGLHVCAPLKPRADWTELKAF
TKAMAETMAQEAPDTYVATITKAKRRGRILVDYLRNQRGSTAVAPYSARARAGAPVSMPI
AWEELGEGMGPQHFTVLNAPARLANLSADPWADFRKAAAPLPAGRTAGGTAGGKRRGGRR
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgggcctcagcacctatcgcgccaagcgcgacttcaccgtgactcccgagcccgacggc
ggcgcgaaaggcaaggcccgcgccgcagccagcgcctcggcgggcgcctatgtgatccag
aagcacgccgcccgccgcctgcactatgatctgcggctggagatggatggcgtgctgaag
agctgggccgtcacgcgcgggccgagcctcgtgcccggtgagaagcgcctcgccgtgcat
gtggaggaccatccgctcgcctatggcggcttcgagggtaccatccccgagggccagtac
ggggcgggcaaggtcatcgtctgggatcgcggcagctggaccccggtgggggatccgcac
aagggctacaagaaggggcatctggaattcgcactcgacggcgaaaagctccatggccgc
tggcatctggtgcgcatgtcaccccaccccggcgacaagaaggaaaactggctgctcatc
aaggtggaggacgaggcggcgcgccctgagggtgcgcccgagattaccgacgaggcgccc
ctctccgtcgtctcgggccgggacgttgaggaagtgggtgccccatcggccgcaaagtcc
ccgaagttaagcacggcaaagacgtccaggccgaaggctgcggcacgcgatgcgaaggca
tccgaggaggccgagacgaccgcaagcggcgcggagcggggtgcgcgcgcagtgtctgct
ccggcaaaagccaagaaaacgacggccgcaagggtcaacggacgctccacccgcgcgacc
gcctgggacctgccaaagggcgcgaaacgcgcgcctttgccggatttcctgcccccggct
ctcgccacgctggccaggcaggcgccgaagggccggcgctatgtccatgagatcaagttc
gatggctatcgcatcgccgcgcggcttgaggatggagaggtccgcctgcttacgcgcacc
ggcctcgactggtccgcgcgcttcgggacggcgatccgggaggcggccgcggcccttccc
gtatccgatgccatgcttgatggcgaggtggtggtggagggcggcaacggcgcctcggac
ttctccgccttgcaggcggatctgagcgaagggcgcacggaccgcttcgtctattatgcc
ttcgatctcctgcatctcgacgggcacgacctgacgggcgcgccgctcgcggagcgcaag
gcgctgctggagcaattgctcaccagagctgaagggagcggcgaaggcgtcctgcgctac
agcggccatttcgaggatgacggcgccatggtgctccagcatgcctgccggctgagcctg
gagggcgtcgtctccaagctcaaggatgcgccctatcattccggccgctcgcgggactgg
atcaagtccaagtgctcggagcggcaggagttcgtgatcggcggcttcgtgccctccacc
actgcccgcaaggctatcggctcgctggtgctcggcgtctatgagggcaagcgcctcgtc
catgtggggcgtgtgggcacgggcttctcgaacaagatggcgtcggatctccacaccctg
ctggcgcccgaggcggttgaggaaagtccgttttccgcgcggcttacggcggatgaggcg
cggggcgtcacctttgttgcgcccaagcgtgtggccgaagtcgagttccgcgcctggacg
ggagacggccacctgcgccacgccgccttccggggactgcgcgacgacaaggcggccgcc
gatgtggtgcgcgaggccgcgtcgcagccggccgagacgcccaagacaccgcccaagcgc
cgggtgcgcctcacccatcctgaccgcatctactggccggatgcgggcgtcaccaaggag
ggattggccgattattacgcagaggtctggccgcgcatcgcgccctttatcgtcggccgg
ccgctggcgctggtgcgttgtccggagggcatcgaagggcagcacttcttccagaagcac
ccgtggaagggcgcggacaaggcgctgaaggaggtgcacgatcccaaggccccggacgag
ccgccctatctcgccgtcgagacgctggacgggctgatggcgctggtgcagggggcggcg
ctggaaatccaccccttcggtgctccgctctcggactgggagcgcccggaccttctcacc
atggatctcgaccccggcgagggcgtcccatggagcgcggtcatcgccgctgcccatgag
gtgaaggcgcgccttgagacggcgggccttgccgccttcgtgaagacctccggcggcaag
gggctgcatgtctgcgcgccgctgaagccgcgggccgattggaccgaactcaaggccttc
accaaggccatggccgagacaatggcgcaggaggcgcccgacacctatgtggcgaccatc
accaaggccaagcggcgtggccgcatccttgttgattatctgcgcaaccagcgcggctcc
acggcggtcgcgccctattccgcccgcgcgcgggccggggcgcccgtctccatgcccatc
gcttgggaggagctgggcgagggcatggggccccagcatttcacggttctgaacgcaccg
gcgcggctcgccaatctctcggccgatccatgggctgatttccggaaggcggcggcgccc
ctgccggcgggcagaacggcgggcggaacggccggcggcaaacggcgcggcgggaggcgc
tga
DBGET
integrated database retrieval system