Azoarcus sp. DN11: CDA09_15860
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Entry
CDA09_15860 CDS
T05691
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
azd
Azoarcus sp. DN11
Pathway
azd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
azd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CDA09_15860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
azd03400
]
CDA09_15860
Enzymes [BR:
azd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CDA09_15860
DNA repair and recombination proteins [BR:
azd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CDA09_15860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AYH44841
LinkDB
All DBs
Position
complement(3447734..3450520)
Genome browser
AA seq
928 aa
AA seq
DB search
MPRGHEAVPPARRAKGQPAADPPGELGEYAAKRTFAATPEPAPAVPQAGGGPLLFVIQQH
SARRLHFDFRLECDGVLKSWAVPKGPSLDPAEKRLAVQTEDHPYDYASFEGVIPPGQYGA
GEVIVWDCGVYSPDEDQAYSFDDRDEAQRRVREGLAQGKLSFLLRGEKVKGSFALVRTSE
PRNWLLIKHKDRFAGPADPGARNRSVLSGLMVEELKVLPVRRIPVATLVPGGRPEAMPAT
LSPMLAETGEAPFADADWLWEPKLDGYRVLAFVSGERAKIRVKLLSRRGLDLTATFPRLA
AELCGQGADMILDGEIVAFDAAGRPSFNALQNRFQLKTERDIATADRSTPVVFCCFDLLH
FAGVDLRGAPYRDRRRYLAQCLLPSPLLQLVHVAEDGEALHGAALASGFEGVVGKRKDSR
YEAGRRSASWLKIKAAQSAEFVVGGYTRGKGSRAPLGALLIGYRDGGVLRYASHVGSGFD
AATLAQVRARLEGLRTDACPFAEPPELNGPTTWVVPEMVVEVQFQAWTEDGSLRAPVFLR
VRDDIDPRTVRRSGHRPQVPHAAGAPGAEGGSGEIDEILRQLENGKAAFPLAVGPHRIRL
THLDRVYWPADPALRQPALTKRDLLRYFAQVSPFLLPHLADRPLTLIRMPDGIGGQRFFQ
KHWEQERPGFVDTLTVFSEHKDESHEALVCNNLATLLWLAQSGTIELHVWHSRARAGADA
AVQGTDYAGSLASLEASVLNFPDYVVFDLDPYIYSGHEAPGAEPELNTAAFEKGKEVAFW
LHELLQGMALDAIVKTSGKTGLHVFVPIRRTIDFDAARKVCELVGRHLLRQHPRDITMEW
SVRARTGKIFLDYNMNVRGKTLNVAYSPRGVPGAPVSMPLTWDELAGAHPLDFRITNVAQ
RLAQSGDHWHDALERKQSLEKAVSGARS
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcgggcatgaggcggttccgcccgcgcggcgggcaaagggacaacctgcggcc
gacccgcctggcgaactcggcgaatacgccgccaagcggactttcgctgccacgccggag
ccggcgccggcggtgccgcaggcaggcggagggccgttgctcttcgtgatccagcagcac
tcggcgcggcggctgcatttcgacttccggctcgaatgtgatggagtgctgaaatcctgg
gcagttcccaaggggccgtccctcgatcccgcggagaagcggcttgcggtccagaccgag
gatcatccctatgactacgcctcgttcgaaggcgtcatcccgcccgggcagtacggtgcc
ggggaagtgatcgtgtgggactgcggcgtttattcacccgacgaggatcaggcgtattcg
ttcgacgatcgggacgaagcgcagcggcgggtccgcgaagggctcgcgcagggcaagctg
agcttcttgctgcgcggagagaaggtgaagggctccttcgccctcgtccgcacgtcggag
ccgcgcaactggctgctgatcaagcacaaggaccgctttgcggggccggccgatcccggc
gcgaggaaccgctcggtactcagcggattgatggtcgaggagctcaaggtcctgccggtg
cgccgcattccggtggcgacgctggtgcctggcggcaggcccgaggcgatgcccgcgacg
ctctcgcccatgctcgccgagaccggcgaggcgccctttgctgatgccgactggctgtgg
gaaccgaagctcgacggttatcgcgtgctggccttcgtctccggggagagggcgaaaata
cgggtgaagctgctttcgcgccggggcctcgacctgaccgccaccttcccgcggctcgct
gcggaactgtgcggccagggggcggacatgatcctggatggagagatcgtggccttcgat
gcggccggccggccgtcgttcaatgcgctgcagaatcgcttccagctgaaaaccgaacgc
gacatcgccaccgccgaccgcagcacgccggtggtgttctgctgcttcgacctgctgcac
ttcgcgggcgtcgacctgcgcggagcgccgtatcgcgaccgccgccgctacctcgcccaa
tgcctgctgccttcgcccctgctgcagctcgtccatgtcgcggaggacggggaggcgctg
catggagcggcgctcgccagcggcttcgagggggtggtcggcaagcgcaaggacagccgc
tacgaggccggccggcgctcggcatcgtggctcaagatcaaagccgcgcagagcgcggag
ttcgtggtcggcggctacacgcgcggcaagggatcgcgggcacccctgggcgcgctgctg
atcgggtaccgggatgggggcgtgctgcggtacgcctcgcatgtcggatccggcttcgac
gccgcgacgctggcgcaggtcagggcgcgactggagggcttgcgaacggacgcctgcccg
ttcgcggagccgccggagctgaacggcccgacgacgtgggtcgtgccggagatggtggtc
gaagtgcagttccaggcgtggaccgaggacggtagcctgcgcgcgccggtttttctgcgt
gtgcgcgacgacatcgacccccggacggtgcggcgttccgggcacaggccgcaggtgccg
cacgcagcgggagcgccgggcgcggaggggggaagcggcgagatcgacgagatcctgcgg
caactggagaacggcaaggcggcctttccgctcgcggtcgggccgcaccggatccggctg
acgcatctcgatcgcgtctactggccggcggatccggcactcaggcaaccggcgctgacc
aagcgcgacctgctgcgctatttcgcacaggtttcgcccttcctcctgccgcacctcgcg
gaccgtccgctgacgctgatccgcatgcccgacggcatcggcgggcagcgattcttccag
aagcactgggagcaggagcggccggggttcgtggacaccctcacggtgttttccgagcac
aaggacgagagccatgaggcgctcgtgtgcaacaacctggcgacgctgctgtggcttgcg
cagtcgggcacgatcgagctccacgtctggcattcgcgggcacgcgccggggcggatgcg
gcggtgcaggggaccgactacgccggatcgctcgcctccctggaggcctcggtgctcaac
tttcccgactacgtggtgttcgacctcgacccctacatctattccggccacgaggcgccg
ggggcagagccggagctcaacacggccgccttcgagaagggcaaggaggtcgccttctgg
ctgcacgaactgctgcagggcatggcgctcgacgcgatcgtcaagacctcgggcaagacc
gggctgcatgtcttcgtgccgatccggcgcacgatcgatttcgatgccgcgcgcaaggtg
tgcgaactcgtcgggcggcacctgctgcgccagcatccgcgggacatcacgatggagtgg
agcgtgcgcgcgcggaccggcaagatcttccttgactacaatatgaacgtccgcggcaag
accctgaacgtcgcctattcgccccgcggggtgcccggcgcgccggtgtcgatgccgctc
acctgggacgagctggccggcgcgcacccgctcgacttcaggatcaccaacgtcgcgcag
cgcctggcgcaatcgggtgatcactggcacgacgccctggagcgcaagcagagtctggaa
aaggccgtgtcgggcgccagatcatga
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