Azoarcus sp. CIB: AzCIB_2065
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Entry
AzCIB_2065 CDS
T04019
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
azi
Azoarcus sp. CIB
Pathway
azi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
azi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AzCIB_2065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
azi03400
]
AzCIB_2065
Enzymes [BR:
azi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AzCIB_2065
DNA repair and recombination proteins [BR:
azi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AzCIB_2065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SNF2-rel_dom
Glyco_tran_WecG
AAA_16
DUF4217
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AKU11960
LinkDB
All DBs
Position
2301802..2305260
Genome browser
AA seq
1152 aa
AA seq
DB search
MSRPLDTLIPQLASLALPKPGARLDLPALAGSADAVAVAQLASRGRCLLLVTANPLDAQR
LQDEIAWIAPGLRSHLLPDWETLPYESFSPHQDLISERLSTLYAVSRGEADIVLVPASTA
LYRMAPPAFLAAYTFFLKQGTKLDVDQLRNQMAVAGYTHVTQVVSPGEFSVRGGLVDLYP
MGAALPFRIDLFDDEVESIKTFDPDTQRTVYPVPEIRMLPAREFPMDEKGRTHFRSRFRE
TFEGDPSRVSLYKDVSNGIAPAGIEYFLPLFFDDTATLFDYLPADAAVVLHRDVPTAIDE
FWRDTRSRYDFLKGDRTRPVLPPEALFLGQESFYGALKDRPRIHIAAPDAGAEAAAAAQL
PDLSVERKATNPLHRFKDFLEGDWARAGGRVLVLADAPGRRETMSEFFVEYGLKPAASAD
FAGFLASAEPLALGVGPLATGFLLPDAKIAIVTESELYAATTRTRARRDTRKAATMEGWL
RDLSELKPGDPVVHESHGIGRYLGLIHMDLGEGQTEFLDLEYANGDKLYVPVAQLHVITR
YAGADPEAVELHRLGSGQWDKAKRKAAMQVRDTAAELLALYAQRAARPGHRFDFKQHDLD
AFAEGFGFETTPDQQGAIDAVVADMKSGRPMDRLVCGDVGFGKTEVALRAAFIAVADGKQ
VVVLTPTTLLAEQHYQTFADRFADFPIRIAELSRFKSAKEQAEALKQLAEGKVDIIIGTH
RLLQKDVVFKRLGLVIIDEEHRFGVRQKESLKALRSEIDILTLTATPIPRTLGLALEGLR
EFSVIATAPQKRLAIKTFVQRHSKGIVREAVLREFKRGGQVYFLHNEVDTIENVRNDLAE
LVPEARIVVGHGQLPERELERVMRDFTSQRANLLLCTTIIETGINIPTANTIIINRADRF
GLAQLHQLRGRVGRSHHQAYAYLLTDAHAKPTPLAQKRLEAITAMEELGSGFYLAMHDLE
IRGAGEVLGENQSGEIQQVGFSLYTEMLKRAVRDLQAGKEPDLSQPLEVVSEINLHTPAL
LPNDYCPDVQERLTLYKRLANCDADDELRSLQEELIDRFGELPPQTQALIESHRLRLLVK
PYGVAKLDASDAQISVQFGPNPPIDPVKVIMLIQKDRNTKMSGPDRLIRKASLPNLKQRV
QGVRELLDAVMA
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgaccgctcgacaccctgattccgcaactcgcctccctcgccctcccgaaaccc
ggagcacgcctcgacctccccgccctcgccggctccgccgatgcagtcgcggtcgcccag
ctcgcgtcgcgcgggcgctgcctcctgctggtgacggccaacccgctcgacgcccagcgg
ctgcaggacgaaatcgcatggatcgcgccgggtctgcgctcccacctgctgccggactgg
gaaacgctgccgtacgagagcttctctccgcaccaggacctgatctccgagcgcctgtcg
accctgtacgcggtgagccgtggcgaggccgacatcgtcctcgtgccggcctcgacggcg
ctgtatcgcatggcaccgcccgccttcctcgcggcctacaccttcttcctgaagcagggc
acgaagctcgacgtcgaccagctgcgcaaccagatggcggtcgccggttacacccacgtc
acgcaggtcgtcagccccggggagttctcggtgcgcggcggcctcgtcgacctctatccg
atgggcgcggccctgcccttccgcatcgacctcttcgacgacgaggtcgaaagcatcaag
accttcgatccggacacgcagcgcaccgtctatccggtgccggaaatccgcatgctgccg
gcgcgcgagttcccgatggacgagaagggccgcacgcacttccgcagccgcttccgcgag
accttcgagggcgatccctcgcgcgtgtcgctgtacaaggacgtatcgaacggcatcgcc
ccagcgggcatcgagtacttcctgccgctgttcttcgacgacaccgcaaccctgttcgac
tacctgccggccgacgcggcggtcgtgctgcaccgtgacgttccgaccgcgatcgacgag
ttctggcgcgacacgcgctcccgttacgacttcctcaagggcgaccgcacgcgcccggta
ctgccgccggaagcgctgtttctcggtcaggaatccttctacggcgcgctgaaggatcgc
ccgcgcatccacatcgcggcaccggatgccggcgccgaagccgccgcggcggcacagctc
cccgatctgtccgtggagcgcaaggcgaccaatccgctgcatcgtttcaaggatttcctc
gaaggcgactgggccagggccggtgggcgggtgctggtgctcgccgacgcgcccggccga
cgcgagacgatgtcggaattcttcgtcgagtacggactgaaacccgccgcgagtgcggac
ttcgcgggctttctcgcgtccgccgagcccctcgcgctgggcgtcggcccgctcgcgacc
ggcttcctgctgcccgacgcgaagatcgcgattgtcaccgaatccgagctgtacgctgcg
acgacgcgcacgcgcgcccgccgcgacacacgcaaggcagcgacgatggagggctggctg
cgcgacctctccgagctgaaaccgggcgatccggtcgtgcacgaatcgcacggcatcggc
cgctacctcggcctgatccacatggacctcggcgaggggcagaccgagttccttgacctg
gaatacgccaacggcgacaagctctacgtgccggtcgcccagctgcatgtgatcacgcgt
tacgccggcgccgaccccgaggccgtcgaactgcaccgcctcggctccggccagtgggac
aaggcgaagcgcaaggccgccatgcaggtgcgcgacaccgccgccgaactgctggccctg
tacgctcagcgcgcggcccgccccggccaccgcttcgatttcaagcagcacgacctcgac
gcgttcgccgaaggcttcggcttcgagaccacgccggaccagcagggcgcgatcgacgcc
gtcgtcgccgacatgaaatccggccggccaatggaccgcctcgtgtgcggcgacgtcggt
ttcggcaagaccgaggtcgcgctgcgcgcggccttcatcgcggtcgccgacggcaagcag
gtcgtcgtcctgacgccgaccacgctgttggccgagcagcactaccagaccttcgccgac
cgcttcgccgacttcccgatccgcatcgccgaactgtcgcgcttcaagagcgccaaggag
caggccgaggccctgaagcagctcgccgaaggcaaggtcgacatcatcatcggcacgcat
cgcctgctgcagaaggacgtcgtcttcaagcgcctgggcctcgtcatcatcgacgaggaa
caccgcttcggcgtgcgccagaaggagtcgctgaaggcgctgaggagcgaaatcgacatc
ctgaccctcaccgcgacgccgatcccgcgcacgctgggcctcgcgctcgaaggcctgcgc
gaattctcggtgatcgccaccgcgccgcagaagcgcctcgcgatcaagaccttcgtgcag
cgccacagcaagggcatcgtgcgcgaggcggtgctgcgcgagttcaagcgcggcggccag
gtgtatttcctgcacaacgaagtcgatacgatcgaaaacgtgcgcaacgacctcgccgaa
ctggtgcccgaggcacgcatcgtcgtcggccacggccagctaccggaacgcgagctcgaa
cgcgtgatgcgcgacttcacatcgcaacgcgcgaacctgctgctgtgcacgaccatcatc
gagactggcatcaacatcccgaccgccaacaccatcatcatcaaccgcgccgaccgcttc
ggcctcgcccagctgcaccagctgcgcggtcgcgtcggccgcagccaccatcaggcctac
gcctacctgctgacggacgcccatgcaaagccgacgccactggcgcagaaacgccttgag
gcgatcacggcgatggaggagctgggttccggcttctacctcgcgatgcacgacctggag
atccgcggcgcaggcgaggtgctcggcgaaaaccagtccggcgagatccagcaggtcggc
ttcagcctgtacaccgagatgctcaagcgcgccgtccgcgacctgcaggcgggcaaggag
cccgacctcagccagccgctggaagtcgtctccgagatcaacctgcacacgcccgccctg
ctgcccaatgactactgccccgacgtgcaggagcgtctgacgctctacaagcgcctcgcg
aactgcgacgcggacgacgaactgcgcagcctgcaggaagagctgatcgaccgcttcggc
gagctgccgccgcagacccaggccctgatcgaatcgcaccgcctgcgcctgctcgtgaag
ccctacggcgtcgccaagctcgacgccagcgatgcgcagatcagcgtccagttcggcccc
aacccgccgatcgatccggtcaaggtcatcatgctgatccagaaggaccgcaacacgaag
atgtccggccccgaccggctgatccgcaaggccagcctgcccaatctgaaacagcgcgtg
cagggcgtcagggagttgctcgacgcagtcatggcctga
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