Azoarcus sp. CIB: AzCIB_2618
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Entry
AzCIB_2618 CDS
T04019
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
azi
Azoarcus sp. CIB
Pathway
azi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
azi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AzCIB_2618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azi03019
]
AzCIB_2618
03016 Transfer RNA biogenesis [BR:
azi03016
]
AzCIB_2618
Enzymes [BR:
azi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AzCIB_2618
Messenger RNA biogenesis [BR:
azi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AzCIB_2618
Transfer RNA biogenesis [BR:
azi03016
]
Prokaryotic type
tRNA degradation factors
AzCIB_2618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
SLS1_KH2
KH_2
KhpA-B_KH
Motif
Other DBs
NCBI-ProteinID:
AKU12511
LinkDB
All DBs
Position
complement(2925957..2928056)
Genome browser
AA seq
699 aa
AA seq
DB search
MPTAIKKTFAYGAHTVTIETGEIARQAGGAVIVDMDDTVVLATVVAAKEAKTGQDFFPLT
VDYVEKFYAAGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPDGFYNEVQVIVTVLSL
NPEIDSDIPAMIGASAALAISGVPFNGPIGACRVGYANGEYILNPTVEQLKTSQLNLVVA
GTEAAVLMVESEAQELSEEVMLGSVVFGHQQMQAAIRAINELVEVAGKPEWNWQPPAKNE
ALINRVKELAGAQLEDAFRITSKQARTERVNEIRKNTIATITAELEAAPTGNELKDIFHE
LEAGIVRSRILAGEPRIDGRDTRTVRPIEIRVGVLPRTHGSALFTRGETQALVVATLGTG
RDEQIIDAIAGEYRESFMLHYNFPPFSTGETGRMGVTKRREVGHGRLAKRALIAALPAPQ
DFSYTVRVVSEITESNGSSSMASVCGGSLALMDAGVPMKEHVAGIAMGLIKEGNRFAVLT
DILGDEDHLGDMDFKVAGTERGVTALQMDIKIQGITKEIMQVALAQAGEGRMHILGIMKQ
SLASHRGEVSEFAPRMITMKINPEKIRDVIGKGGAVIRALQEETGTVIEIEDDGSLTISS
VSAEGAQLAKEKIDAITAEVEVGKVYNGTVIRLLDFGAIVNIMPGRDGLLHVSQIANERV
NNVADYVKEGQAVRVKVLETDERGKIRLSMKALLDQPAE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
ttgcctaccgccattaaaaaaacattcgcatacggcgcgcataccgtcaccatcgagacc
ggcgagattgctcgtcaggcaggtggtgccgtcatcgtggacatggacgacaccgtggtc
ctcgccaccgtcgttgccgccaaggaagccaaaaccgggcaggacttcttccccctcacc
gtcgactacgtcgagaagttctacgcggccggccgcattccgggcggtttcttcaagcgt
gaagggcgtccgaccgagaaggaaacgctgaccagccgcctgatcgatcgcccgatccgc
ccgctgttcccggacggcttctacaatgaagtccaggttatcgtcacggtgctgtcgctc
aacccggaaatcgattccgacattccggcgatgatcggcgcatccgccgcgctggcaatc
tcgggcgtgccgttcaacggcccgatcggggcctgccgcgtcggttatgccaacggcgag
tacatcctcaacccgactgtcgagcagctcaagaccagccagctgaacctcgtcgttgcc
ggtaccgaggcggcggttctgatggtcgaatccgaggcgcaggaactctcggaagaagtg
atgctcggttcggtggtgttcggccaccagcagatgcaggcggcgatccgcgcgatcaac
gaactcgtcgaggtcgctggcaagcccgagtggaactggcagccccccgccaagaacgag
gcgctcatcaaccgcgtcaaggaactcgcgggcgcccagctcgaggatgcgttccgcatc
accagcaagcaggcccgtaccgagcgcgtgaacgagatccgcaagaatacgatcgctacg
atcaccgcggagttggaagcagcgccgaccggtaacgagctcaaggacatcttccatgag
ctcgaggcaggcatcgtgcgcagccgcatcctggctggcgagccgcgtatcgacggccgc
gacacccgcaccgttcgcccgatcgagatccgcgttggcgtgctgccccgcacgcacggt
tcggcgctgttcactcgtggcgaaacccaggctctcgttgtcgcgacgctgggtaccggg
cgcgacgaacagatcatcgacgcgattgcgggcgaataccgcgagagcttcatgctgcac
tataacttcccgccgttctcgaccggcgaaaccggccgcatgggcgtgacgaagcgtcgc
gaagtcggtcacggccgtctggcgaagcgcgcgctgatcgcggcgctgccggcaccccaa
gacttcagctacacggtccgcgtcgtgtcggaaatcaccgagtccaatggctcgagctcg
atggcttcggtgtgcggcggctcgctcgcgctgatggacgccggcgtgccgatgaaggaa
cacgtggccggcattgcgatgggcctgatcaaggaaggcaaccgtttcgccgtcctgacc
gacatcctcggcgacgaggaccatcttggcgacatggacttcaaggtcgcgggcaccgag
aggggcgtcacggcgctgcagatggatatcaagatccagggcatcacgaaggaaatcatg
caggttgcgctcgcgcaggcgggcgagggccgcatgcacatcctcggcatcatgaagcag
tcgctcgcctcgcatcgcggtgaagtgtcggagttcgctccgcgcatgatcacgatgaag
attaacccggagaagatccgcgacgtgatcggcaagggcggtgcggtgatccgtgcgctg
caggaggagaccggcacggtgatcgagatcgaggacgacggcagcttgaccatctcgtcg
gtcagcgccgaaggtgctcagctcgcgaaggaaaagatcgacgccatcacggccgaggtc
gaggttggcaaggtgtacaacggtaccgttatccgcctgctcgatttcggcgcgatcgtg
aacatcatgccgggtcgcgacggactgctgcacgtgtcgcagatcgcgaacgagcgcgtc
aacaacgtcgccgactacgtcaaggaaggtcaggccgtgcgcgtcaaagtcctcgagact
gacgagcgtggcaagatccgcctgagcatgaaggcgctgttggatcagccggccgaataa
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