Azoarcus sp. CIB: AzCIB_4045
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Entry
AzCIB_4045 CDS
T04019
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
azi
Azoarcus sp. CIB
Pathway
azi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
azi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AzCIB_4045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
azi03021
]
AzCIB_4045
03400 DNA repair and recombination proteins [BR:
azi03400
]
AzCIB_4045
Enzymes [BR:
azi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AzCIB_4045
Transcription machinery [BR:
azi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AzCIB_4045
DNA repair and recombination proteins [BR:
azi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AzCIB_4045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AKU13938
LinkDB
All DBs
Position
complement(4495108..4499337)
Genome browser
AA seq
1409 aa
AA seq
DB search
MKSLLADLFKQTLPNEDQFDAITIGLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMAHIELASPTAHIWFLK
SLPSRLGMVLDMTLRDIERVLYFEAFVVVEPGMTPLNRAQLLTEDDYLAKVEEYGDEFDA
LMGAEGIRGLLRTLDVQLEIEKLRGDLETTNSEAKIKKYSKRLKVLEAFQQSGIKPEWMI
LEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRM
LQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVG
PQLKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKQAKKMVESQEPVVWDILEEVIRE
HPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCVAFNADFDGDQMAVHVPLSLEAQM
EARTLMLASNNVLSPANGEPIIVPSQDIVLGLYYATREGVNALGEGMALSDVGELKRAYE
SKQLSLHARVSVRLKEIEVGADGERREKITRYNTTAGRAMLSEILPPGLPFSVIDKPLKK
KEISKLINASFRRCGLKETVVFADKLMQFGFRLATRAGISIAVKDMLVPTLKDSLIHAAE
QEVKEIARQYTSGLVTDGERYNKVVDIWGRAGDQVAKAMMDQLGQEDVVNRNGDTVKQES
FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLNVLQYFISTHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTRDGFVMKALIEGGEVIEALRER
ILGRVCAEDVVNPDSQETEIEAGTLLDEDAVDLIERLGIDEVKVRTALTCATRYGLCGKC
YGRDLGRGSEVNVGEAVGVIAAQSIGEPGTQLTMRTFHVGGAASRAAAASGVESKSAGTI
RFAGNMRYVSNAKGEKVIIARSAEIVVADDMGRERERHKLPYGATLLVDDGAAIKAGVML
ATWDPHTRPIVTEYSGTVKFENVEEGVTVAKQIDEVTGLSTLVVIDGKRRSTGSSSKGVR
PQVKLLDENGEEVKIAGTDHSVAITFQVGSLITVKDGQVIGVGDILARIPQESAKTRDIT
GGLPRVAELFEARPPKDAGVLAEYTGTVSFGKDTKGKQRLVITEADGTVHEFLIPKDKHV
MVHDGQVVNKGELIVDGPADPHDILRLQGIEALARYIIDEVQDVYRLQGVKINDKHIEVI
VRQMLRRVVITDAGDTKFIREEQVERSEVLDENDRVEGDSKLPAQYQNVLLGITKASLST
DSFISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHRNRRAQTAGE
DLGAEHAWAAMQEQPSEVPDGVSQDVQAG
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcctgctcgctgacctgttcaagcaaaccctgccgaacgaagaccagttcgac
gcgatcaccatcggcctcgcatcgccggacaagatccgctcgtggtcgtacggtgaggtt
aagaagcccgagaccattaactaccgtaccttcaagcccgagcgcgacggcctgttctgc
gccaagatcttcgggccggtgaaggattacgaatgcctgtgcgggaagtacaagcgcctc
aagcaccgcggcgtgatctgcgagaagtgcggcgtcgaggtgacgctgtcgaaggtgcgc
cgcgaacgcatggcgcacatcgaactcgcgagccccaccgcgcacatctggttcctgaag
agcctgcccagccgcctcggcatggtgctcgacatgaccctgcgcgacatcgagcgcgtg
ctgtatttcgaagccttcgtggtggtcgagccgggcatgactccgctcaaccgcgcccag
ctgctcaccgaggacgactacctcgcgaaggtcgaggagtatggtgacgagttcgacgcg
ctgatgggcgccgagggtatccgcggcctgttgcgcacgctcgatgtccagctcgagatc
gagaagctgcgcggtgacctcgagacaaccaactcggaagccaagatcaagaagtactcc
aagcgcctgaaggtgctcgaggccttccagcagtctggcatcaagcccgagtggatgatt
ctcgaggtcctgccggtgctgccgccggacctgcgtccgctggtgccgctggacggtggc
cgcttcgcaacctccgacctcaacgacctctatcgtcgcgtcatcaaccggaacaaccgc
ctcaagcgcctgctcgaactcaaggcgcccgagatcatcgtgcgcaacgaaaagcgcatg
ctgcaggaagcggtcgactcgctgctcgacaacggccgccgcggcaaggcgatgaccggt
gcgaacaagcgaccgctgaagtccctcgccgacatgatcaagggcaaaggcggccgcttc
cgacagaacctgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggc
ccgcagctcaagctgcaccagtgcggcctgcccaagctgatggcgctcgaactgttcaag
cccttcatcttcaacaagctcgaactgatggggctcgcgacgaccatcaagcaggcgaag
aagatggtcgagagccaggagccggtggtgtgggacatcctcgaagaggtgatccgcgag
catccggtcatgctgaaccgtgcgccgacgctgcaccgtctcggtatccaggccttcgaa
cccgtcctgatcgaaggcaaggcgatccagttgcacccgctcgtctgcgtcgcgtttaac
gccgacttcgacggtgaccagatggccgtccacgtgccgctgtcgcttgaggcacagatg
gaagcgcgcacgctgatgctcgcgtcgaacaacgtgctctcgcccgctaacggcgagccg
atcatcgtgccgtcgcaggacatcgttctcggcctgtactacgcgacccgcgagggcgtg
aacgcgctcggcgaaggcatggcattgtcggacgtcggcgagttgaagcgcgcctacgag
tcgaagcagttgtcgctgcacgctcgtgtgtcagtccgcctgaaggaaatcgaagtcggc
gccgacggcgagcgccgcgagaagatcacccgttacaacacgacggccggccgcgctatg
ctgtcggaaatcctgccgccgggactgcccttcagcgtgatcgacaagccgctgaaaaag
aaagaaatctccaagctgatcaacgcctcgttccgtcgctgcggtctgaaggaaacggtc
gtgtttgcggacaaactgatgcagttcggcttccgcctggcaacgcgcgccggcatctcg
atcgccgtcaaggacatgttggtcccgactctgaaggactcgctgatccatgcagccgaa
caggaggtcaaggagatcgcccgccagtacacgtccggtctcgtgacggacggcgagcgc
tacaacaaggtcgtcgatatctggggccgtgccggtgaccaagtcgccaaggcgatgatg
gaccagctcggccaggaagatgtcgtcaatcgcaacggcgacaccgtcaagcaggagtcg
ttcaactccatctacatgatggccgactccggtgcgcgtggttcggctgcgcagatccgt
cagctcgccggcatgcgcggcctgatggcgaagccggacggctccatcatcgagacgccg
atcacgacgaacttccgcgaaggtctgaacgttctgcagtacttcatctcaacgcacggt
gcgcgtaagggcctggcggataccgcgctgaagaccgccaactccggttacctgacccgc
cgtctggttgacgtgactcaggatctggtcgtcaccgaggacgactgcggcacgcgcgac
ggcttcgtgatgaaggcactcatcgagggcggcgaagtcatcgaagcgctgcgcgaacgg
attctcggtcgtgtctgtgccgaagatgtcgtgaatccggactcccaggaaacggaaatc
gaggcgggcacgctgctcgacgaggatgctgtcgatctgatcgaacgcctcggcatcgac
gaagtgaaggtccgcactgcgctgacctgcgcaacgcgctatggcctctgcggcaagtgc
tacgggcgcgatctcggtcgtggcagcgaggtgaacgtcggcgaagcggtcggcgttatc
gcggcgcagtcgatcggcgagccgggcacgcagctcacaatgcgtaccttccacgtcggt
ggtgcagcgtcgcgggcagccgctgcgagcggcgtcgaatcgaagtcggccggtacgatc
cgcttcgccggcaacatgcgttatgtgtcgaacgcgaagggcgagaaagtcatcatcgcg
cgttctgccgagatcgttgtcgccgacgacatgggccgcgagcgcgagcgccacaagctg
ccgtacggcgcgaccctgctggtcgatgacggtgcggcgatcaaggcaggggtcatgctc
gcgacgtgggatccgcacacccgtccgatcgtcacggaatactccggtaccgtgaagttc
gagaacgtcgaggaaggcgtcaccgtcgcgaagcagatcgacgaggtgactggtctgtcg
accctggtcgttatcgacggcaagcgccgtagcaccggttcgtcgtcgaagggcgtgcgc
ccgcaagtgaagctgctcgacgagaacggggaggaggtgaaaatcgccggcaccgatcat
tcggtggcgatcaccttccaggtcgggtcactcatcaccgtgaaggacggccaggtcatc
ggcgtcggcgacatccttgcgcgtattccgcaggagtcggcgaagactcgcgacattacc
ggcggtctgccgcgcgtcgctgaactgttcgaagctcgtccgccgaaggacgccggcgtg
cttgcggaatacaccggcaccgtttcgttcggcaaggacaccaagggcaagcagcgtttg
gtgatcaccgaggccgacggcacggtgcacgagttcctgatcccgaaggacaagcacgtc
atggtgcacgacgggcaggtcgtcaacaagggcgagttgatcgtcgacggccctgcggac
ccgcacgacattctgcgtctgcagggtatcgaggcgctggcccgctacatcatcgacgaa
gtgcaggacgtgtaccgtttgcagggcgttaagatcaacgacaagcatatcgaggtgatc
gttcgccagatgctgcgtcgcgtggtcatcacggacgccggcgacaccaagttcatccgc
gaggagcaggtcgagcgttccgaagtcctcgacgagaacgatcgtgtcgaaggcgacagc
aagctgccggcgcagtaccagaacgtcctgctcggcatcaccaaggcatcgctatcgacc
gattcgttcatctccgccgcatccttccaggaaacgacgcgcgtgctgaccgaagcggcc
atcatgggcaagcgcgacgaactgcgcgggctcaaggaaaacgtcatcgtcggccggctc
attcccgccggtactggcatggcgtaccaccgcaaccgccgcgcgcagacggcgggcgag
gatctcggcgccgagcatgcatgggcggcgatgcaggaacaaccgtcggaagtacccgac
ggcgtctcgcaagatgtgcaggccggttga
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integrated database retrieval system
