Azospirillum sp. B510: AZL_022230
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Entry
AZL_022230 CDS
T01169
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
azl
Azospirillum sp. B510
Pathway
azl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
azl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AZL_022230 (rnb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azl03019
]
AZL_022230 (rnb)
03016 Transfer RNA biogenesis [BR:
azl03016
]
AZL_022230 (rnb)
Enzymes [BR:
azl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AZL_022230 (rnb)
Messenger RNA biogenesis [BR:
azl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AZL_022230 (rnb)
Transfer RNA biogenesis [BR:
azl03016
]
Prokaryotic type
tRNA degradation factors
AZL_022230 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
HTH_12
FaeA
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
BAI72861
RhizoBase:
AZL022230
UniProt:
D3NWT2
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All DBs
Position
2531558..2533714
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AA seq
718 aa
AA seq
DB search
MTDSQFPAKDAILAFIRSSTTPVGKREIARAFKLSGSADREMLKELLRDLEADGAVERGR
NKRMAPPRSLPAVAVLLVTGVDADGELSARPLTWTGDGTPPRIFLLPEKRSRGEDKPLAV
GDTLLAKLARINDRLYEGRIIRRIDGEREGRILGVYRPSADGGRIHPTDRRHKTEFLVLP
PNRGEAEPGDLVFADILPAGRAGQPQARVVERLGSTDEPRAFSLIAIHAHGIPTVFPHPA
LREAELAAVPALMQREDLRDLPLVTIDGADARDFDDAVWAEPDGDPENPEGWHLLVAIAD
VSYYVRPGSALDRVAYERGNSVYFPDRVVPMLPEALSNGLCSLRPGEDRACLAFHLWIDR
NGVLIRHRLVRGLMRSAARLTYEQVQECHDGRMDEATAPLADTVIAPLFGAYARLAAARA
RRGTLELDLPERRVRIDERGRVAEIARRERHDSHRLIEEFMIAANVAAAEVLERRAMPGL
FRIHDRPSMEKMEALRGFLAGLGHPLVKSADLTPDHFTRILRKVEGTSHAPLVSEVILRA
QAQASYSPDNIGHFGLALHRYAHFTSPIRRYADLIVHRALIRTLGLGVGGLDDETLGRLA
EIGEHLSGTERRAATAERDAIDRYTAAFLADRVGERFSGRISGVSRFGLFVRLDESGADG
LVPASSLPDDRYDHDEAVHALVGQRTGRTYRLGGPVKLVLVEADPVSGSTLFRLADSA
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacagccagttccccgccaaggacgccatcctcgccttcatccggtccagcacc
acccccgtcggcaagcgcgagatcgcccgcgccttcaagctgtcggggtcggccgaccgc
gagatgctgaaggagctgctgcgggatctggaggccgacggcgcggtcgagcgcgggcgc
aacaagcgcatggccccgccgcgatccctgcccgccgtcgccgtgctgctggtcaccggc
gtcgatgcggacggcgaactgtcggcccggccgctgacctggaccggcgacggcaccccg
ccgcgcatcttcctgctgccggagaagcggtcgcgcggcgaggacaagccgctggcggtc
ggcgatacgctgctggcgaagctcgcccgcatcaacgaccgcctctatgagggccgcatc
atccgccgcatcgacggcgagcgcgaggggcgcatcctcggcgtctaccggccgagcgcc
gatggtgggcgcatccacccgaccgaccgccgccacaagaccgaattccttgtgcttcca
cccaaccgcggcgaggccgagccgggcgacctcgtcttcgccgacatcctgccggcgggc
cgcgccggccagccccaggcccgcgtggtcgagcggctgggctcgaccgacgagccgcgc
gccttcagcctgatcgccatccacgcccatggcatccccaccgtcttcccccatccggcc
ctgcgcgaggccgagctggcggcggtgccggcgctgatgcagcgggaggatctgcgcgac
ctcccgctggtgacgatcgacggcgccgacgcccgcgacttcgacgacgcggtgtgggcc
gagccggacggcgacccggagaatccggagggctggcatctgctggtcgccatcgccgac
gtgtcctattacgtgcggccgggatcggcgctcgaccgcgtggcgtacgagcgcggcaac
tcggtgtacttccccgaccgcgtcgtgccgatgctgcccgaagccctgtcgaacgggctg
tgctcgctgcggccgggggaggaccgcgcctgcctcgccttccatctgtggatcgaccgc
aacggtgtgctgatccggcatcggctggtccgcggactcatgcggtcggcggcgcggctg
acctatgaacaggtgcaggaatgccacgacggtcggatggacgaggcgacggcaccgctc
gccgacacggtgatcgccccgctgttcggcgcgtacgcccggctcgccgccgcccgcgcc
cggcgcggtacgctggagctggacctgccggagcgccgcgtccgcatcgacgaacgcggc
cgggtcgcggagatcgcccggcgcgagcgccatgacagccatcggctgatcgaggagttc
atgatcgccgccaacgtcgcggcggcggaggtgctggaacggcgcgccatgcccggtctc
ttccgcatccacgaccgcccgtcgatggagaagatggaggcgctgcgcggtttcctcgcc
ggcctcggccatccgctggtcaagagcgccgacctgacgccggaccatttcacccgcatc
ctgcgcaaggtggagggcacctcgcacgcgccgctggtcagcgaggtgatcctgcgcgcc
caggcccaggccagctacagcccggacaatatcggccatttcgggctggctctgcaccgc
tacgcccatttcacctcgccgatccgccgctatgccgacctgatcgtccaccgggcgctg
atccgcacgctggggctcggcgtcggcgggcttgacgacgaaacgctgggccggctggcg
gagatcggcgagcatctgtccggcaccgaacgccgcgccgccaccgccgaacgcgacgcc
atcgaccgctacaccgccgccttcctcgccgaccgggtgggggagcgtttcagcggccgc
atctccggcgtcagccgcttcggactgttcgtccggctggacgagagcggcgccgacggg
ctggttcccgccagcagcctgcccgacgacaggtacgaccatgacgaggcggtacacgct
ctggtcggccagcgtacggggcggacctaccgcctcggcggcccggtcaagctggtgctg
gtcgaggccgatccggtcagcggcagcacgctgttccggctggccgactcggcgtga
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