Azospirillum ramasamyi: DM194_07755
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Entry
DM194_07755 CDS
T05500
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
azm
Azospirillum ramasamyi
Pathway
azm03030
DNA replication
azm03410
Base excision repair
azm03420
Nucleotide excision repair
azm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
azm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DM194_07755
03410 Base excision repair
DM194_07755
03420 Nucleotide excision repair
DM194_07755
03430 Mismatch repair
DM194_07755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
azm03032
]
DM194_07755
03400 DNA repair and recombination proteins [BR:
azm03400
]
DM194_07755
Enzymes [BR:
azm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DM194_07755
DNA replication proteins [BR:
azm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DM194_07755
DNA repair and recombination proteins [BR:
azm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DM194_07755
NER (nucleotide excision repair)
GGR (global genome repair) factors
DM194_07755
MMR (mismatch excision repair)
DNA ligase
DM194_07755
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DM194_07755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
RNA_ligase
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AWU94168
UniProt:
A0A2U9S892
LinkDB
All DBs
Position
complement(1679328..1681694)
Genome browser
AA seq
788 aa
AA seq
DB search
MQDLFDTPPNPRSIDVEALAPDQAAAELAALAAEIAHHDRLYHQQDQPEISDADYDALVR
RNLAIEARFPDLRRADSPSLRVGAAPAAGFGKVRHAIPMLSLGNAFAPEDVAEFDARVRR
FLGLSDDAPLTFVAEPKIDGLSCSLRYERGELVLAATRGDGAEGENVTANVRTIRDVPHR
LPAPFPDVLEVRGEVYMNRDDFLAMNAARAEKGEQLFANPRNAAAGSLRQLDPSITASRP
LCFFGYALGEVSEPIAATQWGIRERLKGWGFQLNRPAELCDGRDKLLAYYEGIGRRRAGL
PFDIDGVVYKVDSLELQQRLGFVSRAPRWAIAHKFPAEQAQTRLKAITIQVGRTGALTPV
AELEDITVGGVVVSRATLHNEDEIARKDIRVGDLVVVQRAGDVIPQVVEVVLSQRPADSV
PYVAPETCPVCGSLAIREAGEVVRRCTGGLICAAQAKERLRHFVSRDAFDIEGLGEKIIE
EFWDEGFIKSPVDIFTLEGRVELIGRPGWKEKSVENLFKAINQRRNGIDLHRVIYALGIR
HVGEVTAKSLARHYKTMEGWVDGMLAAEQAMPGQEWRDLHELKGVGRATADAILGWFADP
DCGAKLDFYAGNDALRLETIIASLGIKGVKKPAAQALAERYGTLADWRAAMERASGQIPG
QAWLDLVATPDVGEVAAEELAGFFAEERNLVIVRGLMERLTVLAAEAPKASNSPIAGKTV
VFTGTLERMTRSEAKARAESLGAKVAGSVSGKTDYLVAGADAGSKAAKAKDLGVEILTED
EWLAKIGG
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacctgttcgatacgccgcccaatccccgcagcatcgacgtcgaggcgctggcg
ccggatcaggcggcggcggaactggcggcgctggccgccgagatcgcccatcatgaccgg
ctctatcaccagcaggaccaaccggagatctccgacgccgactatgacgcgctggtccgc
cgcaacctcgccatcgaggcgcgcttccccgatctgcgccgcgccgattcgcccagcctg
cgcgtcggcgccgccccggccgccggcttcggcaaggtgcgccacgccattcccatgctg
tcgctcggcaacgccttcgcgcccgaggatgtggcggagttcgatgcccgcgtccgccgc
tttctcggcctgtccgacgacgcgcctctgaccttcgtggcggagccgaagatcgacggc
ctgtcctgctcgctgcgttacgagcgcggtgaactggtgctggccgccacccgcggcgac
ggggcggagggcgagaacgtcaccgccaatgtccgcaccatccgcgacgtgccgcaccgc
ctgccggcccccttccccgatgtgctggaggtccgcggcgaggtctatatgaaccgcgac
gacttcctggcgatgaacgccgcccgcgccgagaagggggagcagctgttcgccaacccg
cgcaacgcggcggccggcagcctgcgccagctcgacccctccatcaccgcgtcccggccg
ctctgcttcttcggctatgcgctgggcgaagtgtcggagccgatcgccgcgacgcaatgg
ggcatccgcgagcggctgaagggctggggcttccagctgaaccgtccggcggagctgtgt
gacggcagggacaagctgctggcctattacgagggcatcggccggcggcgcgccggcctg
cccttcgacatcgacggcgtcgtctacaaggtcgacagcctggagcttcagcaacggctg
ggcttcgtcagccgggcgccgcgctgggccatcgcccacaaattcccggcggagcaggcg
cagacccggctgaaggcgatcaccatccaggtcggccgcaccggcgcgctgacccccgtc
gccgaactggaggacatcaccgtcggcggcgtcgtggtcagccgcgccaccctgcataat
gaggacgagatcgcccgcaaggacatccgcgtcggcgacctcgtggtcgtccagcgcgcg
ggcgatgtcatcccgcaggtggtggaggtggtgctgtcccagcgccccgccgactccgtg
ccctatgtcgcgccggagacctgcccggtctgcggcagcctcgccatccgcgaggcgggc
gaggtggtccgccgctgcaccggcggcctgatctgcgccgcccaggccaaggagcggctg
cgccacttcgtctcgcgcgacgccttcgacatcgaagggctgggcgagaagatcatcgag
gaattctgggacgagggcttcatcaagtcgccggtcgacatcttcactctggaaggccgc
gtcgaactgatcggccggcccggctggaaggagaagtcggtcgagaacctgttcaaggcg
atcaaccagcgccgcaacggcatcgacctgcaccgggttatctacgcgctcggcatccgc
catgtcggcgaggtgacggcgaagtcgctcgctcgccattacaagacgatggagggctgg
gtcgacggcatgctggcggcggaacaggcaatgccggggcaggagtggcgcgacctgcat
gaactgaagggggtggggcgggcgaccgccgacgccatcctcggctggttcgccgatccc
gattgcggggcgaagctggacttctatgccggcaacgacgcgctgcggctggagaccatc
atcgcctcgctgggcatcaagggcgtgaagaagccggcggcccaggcgctggccgagcgg
tacggtacgctggccgattggcgggcggcgatggagcgggcgtccgggcagattccgggg
caggcttggctcgacctcgtcgccaccccggatgtcggcgaggtcgcggcggaggaactc
gccggcttcttcgcggaggagcgcaacctcgtcatcgttcgcggcctgatggagcggctg
accgtgctggcggcggaagcgccgaaggcaagcaactctcccatcgccggcaagacggtg
gtcttcaccggtacgctggagaggatgacccggtcggaggccaaggcacgcgccgagtcg
ctgggcgccaaggtcgcgggctcggtctccggcaagaccgactatctggtcgccggggcg
gatgccggcagcaaggccgccaaggccaaggatctgggggtcgagatcctgaccgaggat
gaatggctggcgaagatcggcggctga
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