Azospirillum sp. TSH58: TSH58p_25880
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Entry
TSH58p_25880 CDS
T05449
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
azt
Azospirillum sp. TSH58
Pathway
azt02020
Two-component system
azt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
azt00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
TSH58p_25880 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TSH58p_25880 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
azt03021
]
TSH58p_25880 (rpoN)
Transcription machinery [BR:
azt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TSH58p_25880 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
Arg_repressor
Motif
Other DBs
NCBI-ProteinID:
AWJ86865
UniProt:
A0A2S1XQT8
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All DBs
Position
TSH58_p02:1005106..1006683
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AA seq
525 aa
AA seq
DB search
MALSQRLDLRQTQSLVMTPQLQQAIKLLQLSNIELSDFVDREIEQNPLLERDGGSGEGGG
EAGGDGAGESRGEPGVVDLAAPEERQPPMTDGRTRDTVEMTSSETMGSASDAPLDTDFEN
VYSDDRFSDGTDGSSDVYGSWQERGGRGGFEDDESNLEATLTGQKSLRDHLTEQLKIDLP
DLGDQLIGLALIDMLDEAGWITGLEVESLAGQLGCAPERVERVLAACQRFDPPGIFARSL
KECLAIQLREKNRFDPAMAALLDHLELLAARNLPALMKVCGVDAEDIADMVAEIRKLNPK
PALSFDHTPAQLVTPDILMRANPGGGWLIDLNPDTLPRVLVNHRYFARISGTARNKADKE
YITERFQSANWLVKSLHQRATTILKVASEIIRQQDAFFIHGVSHLKPLILRDIAEAIGMH
ESTVSRVTTNKFMATPRGVFELKYFFTSAIQGADGQAAHSAEAVRYRIKAMIDAEKPEDV
LSDDKIVEILRGEGIDIARRTVAKYREAMRIPSSVQRRRAKMSRM
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcagccaacgcctcgatcttcgtcagacccagtccctggtgatgactccgcag
ctgcagcaggccatcaagctgctgcagctgtcgaacatcgaactgtcggacttcgtggat
cgcgagatcgagcagaaccccttgctggagcgcgacggcggctccggcgaaggagggggc
gaggccgggggcgacggtgccggtgagagccggggcgagcccggcgtggtggacctcgcc
gcgccggaggagcgccagccgccgatgaccgacgggcggacccgcgacacggtggagatg
acatcgtcggagacgatgggatcggcgtccgacgcgccgctcgacaccgatttcgagaat
gtctattccgacgaccgcttctccgacgggacggacggctccagcgacgtctacggttcc
tggcaggagcgcggcgggcgcggcggcttcgaggacgacgagtccaacctggaagccacg
ctgaccggccagaagagcctgcgcgaccatctgaccgaacagctgaagatcgacctgccg
gacctcggcgaccagctcatcggtctggcgctgatcgacatgctggacgaggccggctgg
atcaccgggctggaggtcgagagcctggcggggcagctcggctgcgcgccggagcgggtg
gagcgggttctcgccgcctgccagcgcttcgatccgccgggcatcttcgcccgctcgctg
aaggaatgtctggcgatccagcttcgcgagaagaaccgcttcgacccggccatggccgcc
ctgctcgaccatctggagctgctggcggcgcgcaacctgccggcgctgatgaaggtctgc
ggcgtggacgccgaggacatcgccgacatggtggcggagatccgcaagctgaaccccaag
ccggcgctcagcttcgaccacacgcccgcccagctcgtcacccccgacatcctgatgcgc
gccaatcccggcggcggctggctcatcgacctgaacccggacacgttgccgcgggtgctg
gtcaaccaccgctatttcgcgcgcatctccggcaccgcccgcaacaaggcggacaaggaa
tacatcaccgaacgcttccaatcggccaactggctggtcaagtcgctgcaccagcgcgcc
accaccattctgaaggtggccagcgagatcatccggcagcaggacgccttcttcatccac
ggcgtctcgcacctgaagccgctgatcctgcgcgacatcgccgaggccatcggcatgcac
gagagcacggtcagccgcgtcacaaccaacaagttcatggcgacgccgcgcggcgtgttc
gagctgaagtatttcttcacctccgccatccagggggcggacgggcaggcggcccactcg
gcggaggccgtgcgctaccgcatcaaggcgatgatcgacgccgagaagcccgaagacgtg
ctgtcggacgataaaatcgtcgaaatccttcgtggggaagggatcgacattgcgcgccgg
acggtcgcgaagtatcgtgaagcgatgcgcattccgtcatcggtgcagcgacgccgtgcc
aagatgtcacgcatgtaa
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