Arthrobacter zhaoxinii: N2K95_00250
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Entry
N2K95_00250 CDS
T09564
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
azx
Arthrobacter zhaoxinii
Pathway
azx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
azx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
N2K95_00250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
azx03400
]
N2K95_00250
Enzymes [BR:
azx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
N2K95_00250
DNA repair and recombination proteins [BR:
azx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
N2K95_00250
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UWX97184
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All DBs
Position
47285..49936
Genome browser
AA seq
883 aa
AA seq
DB search
MATGGGKQQETVSVEGHRLRLTNLDKVLYPETGTTKADVISYYAAVAEFMLPHSRNRAAT
RKRWVHGVGTPEHPGQVFFQKNIEDSAPSWVKRFSIEHKTSTNTYPLVNDLATLTWLAQS
AALEIHVPQWQFGPRGRIGNADRMVLDLDPGEGAGLAECAEVARLARVILADMGLDARPV
TSGSKGIHLYAALDGSQSSDDINAVAHELARALEADHPDLVVSDMKKARRLGKVLVDWSQ
NNGNKTTICPYSLRGRFTPTVAAPRTWEELEDPHLAQLDYLQVLDRVGSGSDPLAGMESG
AFAEESLEEATADSGEASGAVRSAGGGTDRLIKYRSMRDAAKTPEPVPEEASTPSEGNSF
VIQEHHARRLHWDFRLEHDGVLVSWALPKGPPSTSGKNNLAVQTEDHPLDYGKFEGHIPK
GEYGGGDVTIWDHGTYEREKWRDGKEVIAVLHGQPDGGLAREGAADRRYALIHTGSGGDK
ANNNWLIHLMKNQPKPGEKGTPEAPASPSAAATADTPEETPESPTESVAAAARTRPATAA
APAKTASVDVGKVARDADDASVPAVDPMLATLGSRAEINDDDEWAFEMKWDGVRAVVTVT
PEGTRLLSRNGNDMTAAYPELQDLSAHLNGERAVLDAEIVALNKAGRPDFGLLQPRMHLT
KPREIAAAAGRTPVHLMVFDLLWLDGNSLADLTYEQRREILEQAVEPVPDGHLQVPPALD
MSMDEAVAASKELGLEGVMAKRRSSTYAPGRRSKNWVKLKNQLTQEVVVVGWRPGQGNRQ
NKVGSLLVAVPDGVDLRYIGRVGSGLSEKDLATIGPRLKKMSRKTAPLDDVPSADASDAQ
WVRPALVGEVTFSERTGTGKLRHPVWRGLRPDKKPSDVVVETA
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaggcggaggtaagcagcaggaaaccgtcagcgtggaggggcaccggctccgt
ttgaccaatctggacaaggtgctttatccggaaacggggaccaccaaggcggatgtgatt
tcctattacgccgccgtggccgagttcatgctgccgcactcgcgcaaccgcgccgccacg
cgcaaacggtgggtgcacggcgtggggacgcccgagcaccccggccaggtgttcttccag
aagaatattgaagactccgctccgtcctgggtaaagcggttctccattgagcacaaaacc
tccaccaatacctacccactggtgaatgacctggccacgctgacctggctggcccagtcc
gccgccctggaaatccatgtgccgcagtggcagttcgggccgcgcggcaggatcggcaat
gcggaccggatggtgctggacctggaccccggtgaaggcgcgggcctggctgaatgcgct
gaagtggcccgcctggcccgggtcatcctcgccgacatgggcctggatgcccggcccgtg
accagcggctccaagggcatccacctttacgccgcactggacggcagccagagttccgac
gacatcaatgccgtcgcccacgaactggcccgcgccctggaggccgaccatccggacctg
gtggtcagtgacatgaagaaggcgcggcgcctgggcaaggtgctggtggactggagccag
aacaacggcaataaaaccaccatctgcccgtactcgctgcgtggccggttcactcccacg
gtggccgccccgcggacctgggaggaacttgaggacccgcatctggcgcagctggattat
ctgcaggtcctggaccgcgtcggcagcggctccgatccgctcgccggaatggagagcggc
gccttcgcggaagagtcgctggaggaggccacggcggactccggggaggcgtccggggcg
gtccggtccgcgggcggcggcacggaccggctgatcaagtaccggagcatgcgcgacgct
gcgaagacgccggagccggtcccggaggaggcgtccactccttcggagggcaacagcttc
gtcatccaggaacaccatgcccgccggctgcactgggatttccgtctggagcacgacggc
gtgctggtgtcatgggcgctgcccaaggggccgccgtcgacctccggaaaaaacaatctg
gccgtgcagaccgaggatcacccgctggattacgggaagtttgagggacatattcccaaa
ggggaatatggcggcggggatgtcaccatctgggatcacggcacctatgagcgggaaaag
tggcgggacggcaaggaagtcatcgccgtgctgcacggccagcccgacggcggcctcgcc
cgcgaaggggcagccgaccggcgctacgcgttgatccacaccggctcgggcggcgacaag
gcgaacaacaactggctgatccacctcatgaagaaccagccgaagcccggcgaaaagggg
acccccgaagctccggccagcccctcggccgctgctactgctgacactcccgaggaaaca
ccggaatcgcccacggagtccgtggccgctgccgcccggacccggccggccaccgccgcc
gccccggcaaaaaccgcctccgtcgacgtcgggaaggtagcccgcgacgcggacgacgcg
tcggtgcccgccgtcgacccgatgctggcaacgctcggcagccgggcggaaatcaacgac
gacgacgagtgggccttcgaaatgaaatgggacggtgtacgcgccgtcgtcacggtgacg
ccggaaggtacccggcttctctcccgcaacgggaacgacatgaccgccgcctatccggaa
ctgcaggacctcagcgcgcacctcaacggagagcgggccgtactggacgccgaaattgtt
gcgctgaacaaggccggccggccggacttcggcctgctgcagccccgcatgcacctgacc
aagccgcgggaaatcgccgccgccgccgggcggacaccggtgcacctgatggtctttgac
ctgctctggctggacggaaattcgctggcggacctcacctatgaacagcgccgggaaatc
ctcgagcaggccgtcgaacccgttcccgacgggcatctccaggtgccgccggcactggac
atgtccatggatgaagcggtggcagccagcaaggaactcggtctggaaggggtgatggcc
aagcgccgcagcagcacctatgcccccggccggcgttccaagaactgggtgaagctgaag
aaccagctcacgcaggaggtagtggtggtgggctggcggccggggcagggcaaccggcag
aacaaggtcggttccctcctggttgccgttccggacggggtggacctgagatatatcgga
cgggtggggtccggcctgagcgagaaggacctcgcaaccatcggtccgcgcttgaagaag
atgtcccgcaagacggcgccgctggatgacgtgccctcggctgatgcctccgatgcccag
tgggtacggcccgcgctggtgggtgaagtgaccttctccgagcgcaccggcaccggaaaa
ctccgccatcccgtctggcgcggcctgcgcccggataaaaaaccgtccgacgtcgtggtg
gagaccgcctag
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