Arthrobacter zhaoxinii: N2K95_04845
Help
Entry
N2K95_04845 CDS
T09564
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
azx
Arthrobacter zhaoxinii
Pathway
azx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
azx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N2K95_04845 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
azx03400
]
N2K95_04845 (mfd)
Enzymes [BR:
azx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N2K95_04845 (mfd)
DNA repair and recombination proteins [BR:
azx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N2K95_04845 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UWX98002
LinkDB
All DBs
Position
1039338..1042937
Genome browser
AA seq
1199 aa
AA seq
DB search
MSLNGLRAALAEDPSYARVRTLSSRPVAGRSEDLQIGAPQGMRAALLAEVVDGLAAAGTG
DGIPPVVLAVTATGREAEDLAAALRSYLPLAGIEEFPSWETLPHERLSPRSDTVGRRLSV
LRRLAHPETAPVQIVVAPVRAVLQPLVAGLGELKPVALKVGQEQPFDSVVSALADAAYAR
VDMVSHRGEFAVRGGILDVFPPTEDHPIRIDFFGDEVDSMRWFAVADQRTLTGEHITHPS
ELYAPPCREILITPSVMSRAAKLQGQMPAASDMLEKIAGGIAVEGMESLAPVLVDSMVPL
MGELPRGSIAVVIEPEKVRARAHDLAATNEEFLAAAWATASDGGAAPLDLSAGLASDLDA
ASFRSLADTRTAAQANDVGWWSITSFNPDDETVLDIDTLTINAREPRGYRGDVAEMMDFI
GGRVRDAWRVVVVTEGPGPAARLAELFKENDIPAALVDSVDEEPRPGVISITTASAGRGY
VFDTLKTGLLTEADLLGRASAYSTRDMRRMPSKRRNAVDPLQLQEGDFVVHEQHGVGKFI
ELIQRATGAGTNKTVREYMVLEYASSKRGAPGDRLFIPTDQLDQITRYVGGETPVLSKMG
GSDWAKTKSRARKAVKEIAGELIRLYSARMASRGHAFGPDTPWQRELEEAFPYIETPDQL
TTINEVKADMEREVPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHM
ETFAERFSGFPVRVDSLSRFQTSKQAKETMEGVRTGAVDVVIGTHRILSQEVQFKDLGLV
IVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERHPV
LTYVGPYTDKQASAAIRRELMREGQVFFVHNRVSSIDRTAAHLRELVPEARIAVAHGQMS
ESKLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDRADHFGLSQLHQLRGRVGRG
RERAYAYFLYPSEKPLGEVALERLKAVATHNELGAGMQLAMKDLEIRGAGNLLGGEQSGH
IAGVGFDLYIRLVGEAVADYRGEAEEKAAEMKIELPVNAHLPHEYVPGERLRLEAYRKLA
SALTNEAIDEVLAELVDRYGEPPQEVKNLIDVARFRVDARAAGLTDIALQGNFIKFAPAD
LPESRTMRLQRMYPGALVKPALNAVLVPKPKTARIGGRDLVDAEILAWAKQVLDAVFKE
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaacggactgcgtgccgccctcgctgaggacccctcgtacgcaagggtgcgg
accctttcctcccggcccgtagcaggccgcagcgaagacctgcagatcggtgcaccgcag
ggcatgcgcgccgccctgctcgcggaagtcgtggacgggctggcggcggccgggaccggt
gacgggatcccgccggtggtgctggcggtgacggcaaccggacgcgaggccgaggatctg
gccgccgccctgcgcagctacctgccgctggccggcatcgaggagttccccagctgggag
acgctgccgcacgagcggctgtccccgcgctcggataccgtgggcaggcgcctgtcggtg
ctccgccggctggcgcatccggagaccgctccggtgcagattgtggttgcccccgtgcgg
gccgtgctccagccgctggttgcgggactgggcgaactgaaaccggtcgccctgaaggtc
ggccaggagcagcccttcgactccgtggtgtccgcgctggccgatgccgcctatgcgcgg
gtggacatggtctcccaccgtggcgaattcgccgtgcgtggcggcatcctggacgttttc
ccgcccaccgaggatcaccccatccgcatcgacttcttcggcgatgaggtggattccatg
cgctggttcgcggtcgccgaccagcggacactcacaggggagcacatcacccacccctcc
gagctctacgcccctccgtgccgggaaatcctgatcacgccgtcggtcatgagccgcgcg
gcgaaacttcagggccagatgccggccgcgtccgacatgctggagaaaatcgccggcggg
atcgccgtggaaggcatggagtcccttgccccggtcctggtggactccatggttccgctg
atgggtgagctgccccgcgggtccattgccgtggtgatcgagcccgaaaaggtccgtgcc
cgcgcgcacgacctggctgccaccaacgaggaattcctcgcggctgcatgggccacagcg
tccgacggcggtgccgcacctctggatctttccgccgggctggcttcggacctggacgcc
gcaagcttccgttccctggcagacacgcgcactgcagcgcaggccaatgacgtgggctgg
tggtccatcacctccttcaaccccgacgacgaaaccgtcctagacatcgacaccctgacc
attaatgcccgcgaaccgcgcggctaccggggcgacgtcgcggaaatgatggacttcatc
ggcggccgtgtccgtgacgcctggcgcgtagtggtggtgacagagggtccgggcccagcc
gcccgcctggccgaactcttcaaggaaaacgacatccccgccgccctggtggattccgtg
gacgaagagccgcgccccggcgtcatctccatcaccacggccagcgccggccgcggatac
gtcttcgacaccctcaagaccgggctgcttaccgaagcggacctgctaggccgagccagc
gcctactccacccgcgacatgcgcaggatgccctcgaagcggcgcaacgccgtcgacccg
ctgcagctgcaggagggcgacttcgtggtgcacgagcagcacggggtgggcaagttcatc
gaactgatccaacgggccaccggagccggcaccaacaagaccgtgcgcgagtacatggtg
ctcgaatacgcgtcctccaaacggggtgcacccggggaccggctcttcattcccaccgac
cagctggaccagatcacccgctacgtgggcggcgagacccccgtcctgtccaagatgggc
ggctccgactgggccaagaccaagagccgggcgcgcaaggccgtcaaggagatcgcagga
gagctgatccggctctactccgcacggatggcctccaggggccacgccttcggcccggac
accccgtggcagcgcgaactcgaggaagcgttcccctacatcgaaaccccggaccagctg
accaccatcaacgaggtcaaggcggacatggagcgcgaagttcccatggaccggctggtc
tccggcgacgtgggctacggcaagaccgagatcgcggtccgggcagccttcaaggccgtg
caggacggcaagcaggtcgccgtgctggtgcccaccaccctgctggcccagcagcatatg
gagaccttcgccgagcggttctccggcttcccggtccgggtggactccctgtcccggttc
cagacctccaagcaggccaaggagaccatggaaggcgtcaggaccggcgccgtggacgta
gtcatcggtacccaccgcatcctgtcacaggaagtccagttcaaggatcttggcctggtg
atcgtggacgaggagcagcgcttcggcgtcgaacacaaggaagcgctgaagaagatgcgc
accaacgtggacgtgctggccatgagcgcaacgccgattccgcgcaccctggaaatgtcc
ctgaccggcatccgcgagacctccacgctggccaccccgccggaggaacggcacccggtg
ctcacctatgtgggcccgtacacggacaagcaggcctccgccgccatccgccgcgagctg
atgcgggagggccaggtgttctttgtccacaaccgggtctcctcgattgaccggaccgcc
gcgcacctgcgggagctggtcccggaggcacgtatcgccgtcgcccacggccagatgagc
gagtccaagcttgagcagatcattgtggacttctgggaaaagcgcttcgacgtactggtc
tgcaccacgatcattgaaaccggcctggacatctccaacgccaacaccctgatcgtggac
cgggcggaccacttcggcctctcccagctccaccagctgcgcggccgggtgggccgcggc
cgggagcgggcctacgcctacttcctgtacccgtcggaaaagccgctgggcgaggtcgcc
ctggagcggctgaaggccgtggccacgcacaacgaactgggtgccggaatgcagctggcc
atgaaggacctcgagatccgcggcgccggcaacctgctgggcggggagcagtcaggccac
attgccggcgtcggcttcgacctgtacatccggctggtaggcgaagccgtggccgactac
cgcggcgaggccgaggaaaaagcagcggagatgaagatcgagctgccggtcaacgcgcat
ctgccgcacgaatacgtgccgggggagaggctgcggctggaggcctaccgcaagctggcc
tccgcgctgaccaacgaggcgatcgacgaagtcctggccgaactggtggaccgctacggc
gagccgccgcaggaagtaaagaacctgatcgacgtggcccgcttccgggtggatgcacgc
gccgccgggctgaccgacatcgcactgcagggcaacttcatcaagttcgcgccggcggac
ctgcccgaatcgcgcaccatgcggctgcagcggatgtacccgggtgcgctggtgaagccg
gccttgaacgccgtgctggtgcccaagccgaaaaccgctcgaatcggcgggcgggatttg
gtggacgccgaaatcctcgcctgggccaagcaggtgctcgacgccgtgttcaaggagtag
DBGET
integrated database retrieval system
