Bacillus sp. S3: FAY30_15130
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Entry
FAY30_15130 CDS
T08283
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
baca
Bacillus sp. S3
Pathway
baca03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
baca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FAY30_15130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baca03400
]
FAY30_15130
Enzymes [BR:
baca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FAY30_15130
DNA repair and recombination proteins [BR:
baca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FAY30_15130
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QCJ43124
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Position
3158827..3160656
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AA seq
609 aa
AA seq
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MKPMLPSLTFDLPVRPDWLYEVKYDGFRALLEWNAKGISLTSRNGKDLFPQFPEIRGFLL
QHEKQLKPFLPLLLDGELVSLENTHKANFSAIQVRGRLKSEKKITEQSTRFPCRLMIFDL
LKLKGKPLYSWDFFKRKAELAKLFQSIGLNLEPDPYNDQLLQYVEAYTDFNDLWEKVVLY
DGEGIIAKSKNSPWEEGKRSLQWLKYKNWKYVNCFITSFEKTNGYFYVGVYKDGNIFPIG
QVLFGFKPEEKDALKQTIKQNMVSEDGQFIYVEPAICLKVKYLELYDNQLREPHFDRFRF
DLKPIECSYDRFIFAQKNLPSDLDITHPDKPLWEEHAIQKADYILYLQKISPYMLPFLTN
RLLTVIRYPHGMFGEAFYQKNCPDYAPEFVQTFLADGIDYIVCNDLKTLIWLGNQLAIEF
HVPFQTINSKGPSEIVFDLDPPSKDAFPLAIKAAIYIKEVLDQLNLIGFIKTSGNKGLQI
YLPLQENIYSYEETRLFTSFIAEYLISKDPDSFTIERLKKNRGNRLYVDYVQHSEGKTIV
APYSMRGNEHAGVATPLYWEEVHDKLELVSFNMENALNRIRIQGDPFSDYFQTKQVQPFG
PVLDILKKG
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatgcttccaagtttaacctttgatttgccagtccggcccgattggctgtat
gaggtaaaatatgatggatttagggccctattggaatggaatgcaaaaggaatctcgtta
acaagcagaaacggcaaggaccttttcccgcaatttccagaaataagggggtttttatta
cagcatgaaaaacaattgaaaccatttttgccgctgctgttggacggggagcttgtatcc
cttgagaacacacataaagccaacttctccgccattcaagttagaggaaggttaaagtct
gaaaagaaaattactgaacagtcaactcgttttccctgccgcctcatgatttttgattta
ctaaagctaaaaggaaaaccgctttattcttgggatttttttaaacgaaaagcagaactg
gctaaattatttcaatcaatagggttaaatttagaacctgacccatataatgaccaactg
cttcaatatgtagaggcatatacagattttaatgatctgtgggaaaaagtggttttatat
gatggggaaggtattattgcaaaatccaaaaacagtccatgggaagagggaaagcgttca
ttacaatggcttaaatataagaactggaaatatgtaaactgctttatcacttccttcgag
aagacgaacggctatttttatgttggagtgtacaaggatggcaatatttttccaatcggc
caagtacttttcggctttaaacctgaagaaaaggatgcactcaaacaaacgattaaacaa
aatatggtgagtgaggatgggcaatttatttatgttgaaccagcgatttgcctcaaggta
aaatatttagaactctatgataatcagctgcgtgaaccacactttgatcgattccggttt
gatttgaagcctattgaatgctcatatgaccgctttatctttgcacagaaaaacctaccc
tctgacttggatattacccaccctgataaaccattatgggaagagcatgcaatccagaaa
gcggattatatcttgtacttacaaaaaatttcaccgtacatgcttccgtttttaacgaat
cgtttgttaaccgtcattcgttatcctcatggaatgtttggggaagctttttaccaaaaa
aattgccccgattatgcaccagaatttgttcaaacatttttggctgatgggattgactat
atcgtatgcaatgatttaaaaaccctgatttggctggggaatcaactggcgattgaattt
catgtcccttttcaaaccattaacagtaaaggaccgagcgaaatagtttttgacttagac
cctccctcaaaggacgcgtttccattggcaataaaagcggcaatttatataaaggaagtg
cttgatcaattgaatttaatcgggttcatcaaaacctcaggcaataaagggttgcaaatt
taccttcctctccaggaaaatatttattcatatgaagaaacaagactatttacaagcttt
attgccgaatacttaatctcaaaggatcccgattcatttacgattgaacgcttgaagaaa
aatcgcggaaatagattatatgttgattacgtgcagcacagtgaaggaaaaacgattgtg
gcaccctactccatgagagggaacgaacatgccggcgtggccactccgctttattgggaa
gaagtgcatgacaagttagaactcgtttcctttaatatggaaaatgcccttaaccgaatt
cgcattcaaggggatccatttagcgattatttccaaacaaaacaagtccagccgtttgga
ccggttctagatatactaaaaaaaggataa
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