Bacillus sp. OxB-1: OXB_3302
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Entry
OXB_3302 CDS
T03635
Name
(GenBank) DNA ligase d
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
baco
Bacillus sp. OxB-1
Pathway
baco03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
baco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OXB_3302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baco03400
]
OXB_3302
Enzymes [BR:
baco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OXB_3302
DNA repair and recombination proteins [BR:
baco03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OXB_3302
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BAQ11771
UniProt:
A0A0A8JMU5
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Position
complement(3309078..3310901)
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AA seq
607 aa
AA seq
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MKPMLLTTSETIPAGKGWTYEAKYDGFRCILVWEPNGIMLFSRTGKVLNEKFPEVVDYCK
QIQERLVAHLPLTLDGELVHLINPFKSEFSTVQARGRMRNEQVIQQHRKDFPCHYMVFDL
VKYKGEDLTGLPLQKRKTKLRKLFGKIPSSESSQLQAVESFKDPKEVWERIIENLGEGIV
AKRKSSTWSNEKRSPHWVKVKNWRLVNVIITQYDKMNGYFTGAVHRDGELVNVVTFLHGL
SEEETDTLRKLFHENGHRTSETVWELAPSVCATIACISFDGRHLREPRFHSFDFEIEPGQ
IQWKLMLRQLSPLPPSFQMTHPDKPVWPELGLVKDDYLLYLQQAASFMLPFLKNRLLTVI
RYPHGVPGERFYQKNAPDYTPEFIQTEWEEDIRYIVCQDGKSLLWLGNQLALEYHIPFRT
IDTECPTEIVFDLDPPSVQEFSLAVEAALRMKAIFDRFQLTSFVKTSGGKGLQLYVPLPY
NRFSYEETRVFTKFVCDFLCEQEPAWFTTERMKKKRGNKLYLDYVQHQEGKTIVAPYSPR
GNEQGLVATPLRWEEVTSSLRPEQFPIPVVLERMKTIGNPFRNFRPVGEAQPFDAVLNEL
TSLLGRP
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatgctactgacgacgtccgaaacgatccctgccggaaagggttggacatat
gaagctaaatatgacggatttcgctgcatccttgtctgggaaccaaatggtatcatgctt
tttagcagaaccgggaaagttctaaatgaaaagtttccggaagtagtggactactgcaag
caaatccaggaacggctggtcgcccatcttccattgacgttagacggtgaactcgtccac
ttgatcaatccgttcaaaagcgagttctccaccgtgcaagcaagaggacgaatgcgaaac
gaacaggtcattcagcagcataggaaggacttcccttgtcattacatggtgttcgattta
gtgaaatataaaggggaagatctaacagggcttccgttgcaaaaacggaagacgaaactg
agaaagctgttcggcaaaatcccatccagcgaatcgagtcaacttcaagcggttgaatcg
ttcaaggatccgaaggaagtatgggaacggatcatcgagaacttgggagaagggattgtc
gccaaacgtaaatcgagtacatggtccaatgaaaaacgctcaccccattgggtgaaggtg
aaaaactggagactagtcaacgtcatcatcactcaatacgataaaatgaacggctatttc
acaggtgcggtccatcgagacggggaattggtgaatgtggtcactttccttcatggacta
tcagaagaagagacggacactttgcggaaactttttcatgaaaatggacatcgcacgtca
gaaacggtgtgggagctggctccgtccgtttgtgccacaatcgcctgcatcagttttgat
ggaaggcatttgcgggaaccgaggtttcacagttttgattttgaaatcgagccgggtcaa
attcaatggaaacttatgcttcgccaattgtccccgcttccgccatccttccaaatgacc
catcccgacaaaccggtctggccggaactcggtctcgtgaaagacgactatttgctttac
ttgcaacaggcggcttcgttcatgcttccgtttttaaaaaatcggctgctgaccgtcatt
cgatatccgcatggcgtaccgggggaacgcttttatcagaaaaacgcccccgattacacg
ccggaattcattcaaaccgaatgggaagaggatatccgatatatcgtttgccaggatggc
aagtcactgctttggcttggcaatcaactggctctcgaataccatatcccgtttcggacg
atcgatacggagtgcccgacagaaatcgtcttcgacttggatccgccttctgttcaggag
ttcagcttggcggttgaagcggcgctccggatgaaagcgattttcgaccggttccagctc
acatcattcgtcaagacatccggcggaaaagggttgcagctgtatgttccactgccctat
aatcgattctcgtatgaggagacgagggtgttcacgaaatttgtctgcgattttttatgt
gagcaggagcccgcctggttcacgacggagagaatgaaaaagaagcgtggaaataaatta
tatttggactatgtccagcatcaggaaggcaagacgatcgtggcgccgtactcgccgcga
ggcaatgagcaggggcttgttgcaacgccgctccgctgggaagaagtgacatcttctctc
agaccggagcaatttccgatccctgtcgtgttggaacggatgaagaccatcggtaacccg
tttcggaatttccgtccagtcggggaggctcagcctttcgacgcggtattgaacgaactt
acttcgctgctgggacgtccatga
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