Bacillus sp. Pc3: SB24_03120
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Entry
SB24_03120 CDS
T03544
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bacp
Bacillus sp. Pc3
Pathway
bacp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bacp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SB24_03120 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bacp03400
]
SB24_03120 (ligD)
Enzymes [BR:
bacp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SB24_03120 (ligD)
DNA repair and recombination proteins [BR:
bacp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SB24_03120 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DUF2532
Motif
Other DBs
NCBI-ProteinID:
AJC24227
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Position
779324..781159
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AA seq
611 aa
AA seq
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MVLTMQPILTSVPPEGSEWRYEVKYDGFRCLLRIDESGVTLTSRNGQTLTSQFPEITAFA
ARCFQHMKDRFPITLDGELVYLINPYRADFEHLQIRGRLKRTEAIESNADRRPCRFLAFD
LLVLEGAGTVSLPYVKRKRALSKLFKEANLPACPHHLAEEAIQYIPEHTDFDALWDKVVR
HDGEGIVAKRASSGWAENKRSPDWQKYKHMKTAHVLLTGFNPKNGYVTASVLKDGIAVPI
ASVSHGMQAEEKNAVRTIMETHGKKQKSGEYTLEPSICMTVQYLTILQDTLREVSFVSFQ
FEMDWTECTYQQLILHSKTLPPKLQFTSLDKIVFKKREKTKADFLSYMVKMSDFLMPFLK
DRAVTVIRYPHGAPGESFFQKNKPDYTPDFVSSVFDGSHEHIVCSSIPSLLWLANQLALE
FHVPFQTVYSERPAEIVIDLDPPSRNDFPMAVEAAHVLKQLFDSFSITSFPKLSGNKGIQ
LYIPLSPEAFTYEETRAFTMLIADYCVRTRPDLFTTERFIKNRNGRLYLDYLQHAEGKTI
IAPYSTRGNELGTVAAPLYWSEVNSSLTPDDYTIDTVVNRVRTEGDPFYDFYRNPQDGPL
SIVLEQIKRKS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggtgctgacgatgcagccgattttgacctctgtaccgcctgaaggcagtgagtggcgc
tatgaggtaaagtatgacgggttccgctgtcttctccgcatagacgaaagcggcgtgaca
ttaaccagcagaaacggacagacgctgacgagtcaatttccggaaatcacagcttttgcg
gctcggtgttttcagcacatgaaagacaggttccccattacgcttgacggagagcttgtc
tatttaatcaatccgtacagagcggactttgagcatcttcaaatccgcggacgtttaaaa
cggacggaagcaattgaaagcaacgctgatagacggccgtgccgctttctggcatttgat
ctcctcgttctggaaggcgccggcaccgtctcattaccgtatgtgaaacggaagcgcgcc
ctttccaaactgtttaaagaagcaaatcttcccgcctgccctcatcacttagcggaagaa
gcgattcaatacattccggaacacactgactttgatgcgctttgggacaaggtcgtccgc
catgacggagaaggtatcgtagcaaaaagggcttccagcggctgggcggaaaataaacgc
tcccccgactggcaaaagtataaacatatgaaaacggcacatgtgctattaaccgggttt
aatccgaaaaacgggtatgtaacggcctctgttttaaaagacggcatcgccgtcccgatc
gcgtccgtttcccacggcatgcaggcggaagaaaaaaacgccgtcagaaccattatggag
acccacggaaaaaaacaaaaaagcggcgagtatacacttgagccttctatctgcatgacc
gtgcagtatttaaccatattgcaggacacgctgcgtgaagtatcttttgtgtcttttcag
tttgaaatggattggacggaatgcacgtatcaacagcttatccttcactctaaaacgctg
ccgccgaagctgcagttcacaagtctggataagattgtttttaaaaaacgtgaaaaaacg
aaagcagatttccttagttatatggtgaaaatgagcgattttctgatgccctttcttaaa
gatcgtgccgtcacggtgatccgttatccgcacggcgcgcctggcgaatctttttttcaa
aaaaacaaaccggactacacgccggactttgtctcaagcgtgtttgacgggagccacgag
cacatcgtatgcagcagcataccgtcacttttatggctggctaatcagctggcgcttgaa
tttcacgttccgtttcagacagtgtattctgaaaggcccgcagagattgtcattgatctt
gatcctccgtcaaggaatgattttcctatggcagtggaggctgcgcatgtgctgaaacag
ctgtttgactcattcagcattacgtcattcccgaagctctccggaaataaaggcattcag
ctctacatcccgctttcaccggaagcattcacctatgaagaaacccgtgcgttcacaatg
ctcatcgccgattattgcgtcaggacgcggccggatctttttacgacagagcggtttatc
aaaaaccgaaacggcagactctacctagattatttgcagcatgccgaagggaaaaccatt
atcgccccctattcgacccggggcaacgaattgggaacggttgcggctcccctttattgg
agcgaagtcaactcctctttaacacctgatgattatacgatcgatacagtagtgaaccgc
gtcaggacagagggagatccgttttatgatttttaccggaatccgcaggacggcccgctt
tcaatcgtgcttgagcaaatcaagagaaagagctga
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